Variant report

Variant	rs9484882
Chromosome Location	chr6:144823907-144823908
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10080686	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55686531	1.00[AMR][1000 genomes]
rs55891827	1.00[AMR][1000 genomes]
rs58526186	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59904891	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6902639	1.00[AMR][1000 genomes]
rs6933333	1.00[AMR][1000 genomes]
rs6934085	1.00[AMR][1000 genomes]
rs6939981	1.00[AMR][1000 genomes]
rs73781905	1.00[AMR][1000 genomes]
rs73781911	1.00[AMR][1000 genomes]
rs73781914	1.00[AMR][1000 genomes]
rs73781915	1.00[AMR][1000 genomes]
rs7741783	1.00[AMR][1000 genomes]
rs7762641	1.00[AMR][1000 genomes]
rs7767272	1.00[AMR][1000 genomes]
rs7767347	1.00[AMR][1000 genomes]
rs9496983	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031253	chr6:144599055-144883013	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv538461	chr6:144599055-144883013	Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv1015228	chr6:144780458-144989321	Strong transcription Enhancers ZNF genes & repeats Weak transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv538462	chr6:144780458-144989321	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144764400-144838800	Weak transcription	A549	lung
2	chr6:144792400-144824400	Strong transcription	Primary monocytes fromperipheralblood	blood
3	chr6:144792400-144826000	Strong transcription	Primary B cells from peripheral blood	blood
4	chr6:144795800-144849800	Weak transcription	HMEC	breast
5	chr6:144800000-144829600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr6:144803200-144826800	Weak transcription	Fetal Brain Male	brain
7	chr6:144803400-144869800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr6:144807200-144828800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr6:144807400-144904000	Weak transcription	Brain Substantia Nigra	brain
10	chr6:144812400-144825400	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr6:144812400-144835000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
12	chr6:144812400-144840400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr6:144812400-144844800	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr6:144812400-144881000	Weak transcription	Stomach Mucosa	stomach
15	chr6:144812600-144849600	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr6:144812600-144849600	Weak transcription	NH-A	brain
17	chr6:144812600-144869800	Weak transcription	Colon Smooth Muscle	Colon
18	chr6:144813400-144825600	Weak transcription	HUES48 Cell Line	embryonic stem cell
19	chr6:144813400-144850000	Weak transcription	Colonic Mucosa	Colon
20	chr6:144813600-144824000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr6:144813600-144828800	Weak transcription	Right Ventricle	heart
22	chr6:144813600-144834800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr6:144814800-144834000	Weak transcription	NHLF	lung
24	chr6:144815000-144836200	Weak transcription	H1 Cell Line	embryonic stem cell
25	chr6:144815000-144855400	Weak transcription	Psoas Muscle	Psoas
26	chr6:144815200-144835000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
27	chr6:144815200-144881000	Weak transcription	NHEK	skin
28	chr6:144815400-144828600	Weak transcription	Ovary	ovary
29	chr6:144816600-144829200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr6:144816600-144881400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
31	chr6:144816800-144824400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr6:144817000-144825000	Strong transcription	Primary T cells from cord blood	blood
33	chr6:144817000-144826000	Strong transcription	Monocytes-CD14+_RO01746	blood
34	chr6:144817400-144825800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
35	chr6:144817400-144826400	Strong transcription	Primary B cells from cord blood	blood
36	chr6:144820200-144828600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr6:144820400-144826200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
38	chr6:144820600-144835000	Weak transcription	Placenta	Placenta
39	chr6:144821000-144824800	Weak transcription	HUES6 Cell Line	embryonic stem cell
40	chr6:144821000-144828600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr6:144821000-144828600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr6:144821000-144828600	Weak transcription	Fetal Stomach	stomach
43	chr6:144821000-144834600	Weak transcription	Osteobl	bone
44	chr6:144821000-144835200	Weak transcription	Rectal Mucosa Donor 31	rectum
45	chr6:144821000-144844200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr6:144821200-144824200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
47	chr6:144821200-144825600	Weak transcription	Primary T helper cells PMA-I stimulated	--
48	chr6:144821200-144825600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
49	chr6:144821200-144825800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
50	chr6:144821200-144825800	Weak transcription	Fetal Lung	lung

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