Variant report

Variant	rs73781905
Chromosome Location	chr6:144835389-144835390
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:116960571..116962560-chr6:144835015..144836875,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000203865	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10080686	1.00[AMR][1000 genomes]
rs55686531	1.00[AMR][1000 genomes]
rs55891827	1.00[AMR][1000 genomes]
rs58526186	1.00[AMR][1000 genomes]
rs59904891	1.00[AMR][1000 genomes]
rs6902639	1.00[AMR][1000 genomes]
rs6933333	1.00[AMR][1000 genomes]
rs6934085	1.00[AMR][1000 genomes]
rs6939981	1.00[AMR][1000 genomes]
rs73781911	1.00[AMR][1000 genomes]
rs73781914	1.00[AMR][1000 genomes]
rs73781915	1.00[AMR][1000 genomes]
rs7741783	1.00[AMR][1000 genomes]
rs7762641	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7767272	1.00[AMR][1000 genomes]
rs7767347	1.00[AMR][1000 genomes]
rs9484882	1.00[AMR][1000 genomes]
rs9496983	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031253	chr6:144599055-144883013	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv538461	chr6:144599055-144883013	Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv1015228	chr6:144780458-144989321	Strong transcription Enhancers ZNF genes & repeats Weak transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv538462	chr6:144780458-144989321	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144764400-144838800	Weak transcription	A549	lung
2	chr6:144795800-144849800	Weak transcription	HMEC	breast
3	chr6:144803400-144869800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr6:144807400-144904000	Weak transcription	Brain Substantia Nigra	brain
5	chr6:144812400-144840400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr6:144812400-144844800	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr6:144812400-144881000	Weak transcription	Stomach Mucosa	stomach
8	chr6:144812600-144849600	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr6:144812600-144849600	Weak transcription	NH-A	brain
10	chr6:144812600-144869800	Weak transcription	Colon Smooth Muscle	Colon
11	chr6:144813400-144850000	Weak transcription	Colonic Mucosa	Colon
12	chr6:144815000-144836200	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr6:144815000-144855400	Weak transcription	Psoas Muscle	Psoas
14	chr6:144815200-144881000	Weak transcription	NHEK	skin
15	chr6:144816600-144881400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr6:144821000-144844200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr6:144821200-144835800	Weak transcription	Pancreas	Pancrea
18	chr6:144821200-144836400	Weak transcription	GM12878-XiMat	blood
19	chr6:144821200-144837200	Weak transcription	Stomach Smooth Muscle	stomach
20	chr6:144821200-144838000	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr6:144821200-144850000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr6:144821200-144861000	Weak transcription	Rectal Smooth Muscle	rectum
23	chr6:144822600-144838600	Weak transcription	NHDF-Ad	bronchial
24	chr6:144827200-144857200	Strong transcription	Primary T cells fromperipheralblood	blood
25	chr6:144829000-144836000	Weak transcription	Thymus	Thymus
26	chr6:144829000-144849800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr6:144829200-144849600	Weak transcription	Right Ventricle	heart
28	chr6:144829200-144849800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr6:144829600-144835400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr6:144829600-144849800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr6:144829800-144835800	Weak transcription	Aorta	Aorta
32	chr6:144829800-144835800	Weak transcription	Fetal Stomach	stomach
33	chr6:144829800-144835800	Weak transcription	Lung	lung
34	chr6:144829800-144836000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
35	chr6:144829800-144836800	Weak transcription	Fetal Intestine Large	intestine
36	chr6:144829800-144849200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr6:144829800-144849600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr6:144829800-144849600	Weak transcription	Skeletal Muscle Male	skeletal muscle
39	chr6:144829800-144849600	Weak transcription	Spleen	Spleen
40	chr6:144829800-144849800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr6:144829800-144850000	Weak transcription	Esophagus	oesophagus
42	chr6:144829800-144854200	Weak transcription	Gastric	stomach
43	chr6:144829800-144863800	Weak transcription	H9 Cell Line	embryonic stem cell
44	chr6:144830000-144835800	Weak transcription	Fetal Intestine Small	intestine
45	chr6:144831400-144849200	Weak transcription	Fetal Heart	heart
46	chr6:144831400-144879000	Strong transcription	Primary B cells from cord blood	blood
47	chr6:144831600-144853200	Strong transcription	Primary monocytes fromperipheralblood	blood
48	chr6:144831800-144857000	Strong transcription	Primary B cells from peripheral blood	blood
49	chr6:144832000-144844800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr6:144832200-144856800	Strong transcription	Monocytes-CD14+_RO01746	blood

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