Variant report

Variant	rs6939981
Chromosome Location	chr6:144828921-144828922
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:144828062..144830968-chr6:144835617..144837449,2	MCF-7	breast:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10080686	1.00[AMR][1000 genomes]
rs55686531	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55891827	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58526186	1.00[AMR][1000 genomes]
rs59904891	1.00[AMR][1000 genomes]
rs6902639	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6933333	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6934085	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73780590	0.84[AFR][1000 genomes]
rs73781905	1.00[AMR][1000 genomes]
rs73781911	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73781914	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73781915	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7741783	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7762641	1.00[AMR][1000 genomes]
rs7767272	1.00[AMR][1000 genomes]
rs7767347	1.00[AMR][1000 genomes]
rs9484882	1.00[AMR][1000 genomes]
rs9496983	0.82[YRI][hapmap];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031253	chr6:144599055-144883013	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv538461	chr6:144599055-144883013	Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv1015228	chr6:144780458-144989321	Strong transcription Enhancers ZNF genes & repeats Weak transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv538462	chr6:144780458-144989321	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144764400-144838800	Weak transcription	A549	lung
2	chr6:144795800-144849800	Weak transcription	HMEC	breast
3	chr6:144800000-144829600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr6:144803400-144869800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr6:144807400-144904000	Weak transcription	Brain Substantia Nigra	brain
6	chr6:144812400-144835000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr6:144812400-144840400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr6:144812400-144844800	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr6:144812400-144881000	Weak transcription	Stomach Mucosa	stomach
10	chr6:144812600-144849600	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr6:144812600-144849600	Weak transcription	NH-A	brain
12	chr6:144812600-144869800	Weak transcription	Colon Smooth Muscle	Colon
13	chr6:144813400-144850000	Weak transcription	Colonic Mucosa	Colon
14	chr6:144813600-144834800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr6:144814800-144834000	Weak transcription	NHLF	lung
16	chr6:144815000-144836200	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr6:144815000-144855400	Weak transcription	Psoas Muscle	Psoas
18	chr6:144815200-144835000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
19	chr6:144815200-144881000	Weak transcription	NHEK	skin
20	chr6:144816600-144829200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr6:144816600-144881400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr6:144820600-144835000	Weak transcription	Placenta	Placenta
23	chr6:144821000-144834600	Weak transcription	Osteobl	bone
24	chr6:144821000-144835200	Weak transcription	Rectal Mucosa Donor 31	rectum
25	chr6:144821000-144844200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr6:144821200-144829000	Weak transcription	Rectal Mucosa Donor 29	rectum
27	chr6:144821200-144835800	Weak transcription	Pancreas	Pancrea
28	chr6:144821200-144836400	Weak transcription	GM12878-XiMat	blood
29	chr6:144821200-144837200	Weak transcription	Stomach Smooth Muscle	stomach
30	chr6:144821200-144838000	Weak transcription	Muscle Satellite Cultured Cells	--
31	chr6:144821200-144850000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr6:144821200-144861000	Weak transcription	Rectal Smooth Muscle	rectum
33	chr6:144822400-144829400	Weak transcription	Gastric	stomach
34	chr6:144822400-144833800	Weak transcription	Left Ventricle	heart
35	chr6:144822400-144834000	Weak transcription	HUVEC	blood vessel
36	chr6:144822400-144834200	Weak transcription	HSMM	muscle
37	chr6:144822400-144834800	Weak transcription	Fetal Kidney	kidney
38	chr6:144822400-144835000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr6:144822400-144835200	Weak transcription	HSMMtube	muscle
40	chr6:144822600-144838600	Weak transcription	NHDF-Ad	bronchial
41	chr6:144822800-144835000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
42	chr6:144823600-144829800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr6:144823800-144829800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr6:144825600-144829200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
45	chr6:144826400-144830400	Strong transcription	Primary T helper cells fromperipheralblood	blood
46	chr6:144826600-144830800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
47	chr6:144826600-144831000	Weak transcription	Fetal Heart	heart
48	chr6:144826600-144834800	Weak transcription	HUES64 Cell Line	embryonic stem cell
49	chr6:144826600-144835200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr6:144826800-144829200	Weak transcription	Primary T helper cells PMA-I stimulated	--

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