Variant report

Variant	rs6934301
Chromosome Location	chr6:165351179-165351180
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1227992	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1227993	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12524659	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12524726	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12525689	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1322188	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs58801628	0.85[EUR][1000 genomes]
rs61611447	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6455971	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6455973	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6455974	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6901342	0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7748837	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7749037	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs911723	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9365813	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9365818	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv605232	chr6:164994771-165401154	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv886925	chr6:165319631-165705488	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:165350800-165356200	Weak transcription	Placenta	Placenta
2	chr6:165351000-165351400	Enhancers	Adipose Nuclei	Adipose

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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