Variant report

Variant	rs911723
Chromosome Location	chr6:165342208-165342209
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1227992	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1227993	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1322188	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58801628	0.88[EUR][1000 genomes]
rs61611447	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6455971	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6455973	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6455974	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6901342	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6934301	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7748837	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7749037	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9365813	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9365818	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv605232	chr6:164994771-165401154	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv521153	chr6:165279393-165343557	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv886925	chr6:165319631-165705488	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:165333200-165346200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:165339600-165342800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:165340800-165344000	Active TSS	Brain Anterior Caudate	brain
4	chr6:165341200-165342600	Active TSS	Brain Germinal Matrix	brain
5	chr6:165341200-165342600	Active TSS	Brain Inferior Temporal Lobe	brain
6	chr6:165341200-165342800	Active TSS	Brain Angular Gyrus	brain
7	chr6:165341200-165342800	Active TSS	Brain Hippocampus Middle	brain
8	chr6:165341200-165343000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
9	chr6:165341200-165343200	Active TSS	Fetal Brain Female	brain
10	chr6:165341600-165343200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr6:165341600-165343200	Active TSS	Brain Substantia Nigra	brain
12	chr6:165341800-165342400	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
13	chr6:165341800-165343400	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
14	chr6:165342000-165342400	Flanking Active TSS	Brain Cingulate Gyrus	brain
15	chr6:165342200-165342400	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr6:165342200-165342800	Enhancers	Fetal Muscle Trunk	muscle
17	chr6:165342200-165343000	Enhancers	HSMM	muscle
18	chr6:165342200-165343200	Enhancers	Skeletal Muscle Female	skeletal muscle
19	chr6:165342200-165343400	Enhancers	Fetal Muscle Leg	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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