Variant report

Variant	rs9365813
Chromosome Location	chr6:165339552-165339553
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:165335824..165337632-chr6:165338882..165340730,2	K562	blood:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1227992	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1227993	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1322188	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58801628	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61611447	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6455971	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6455973	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6455974	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6901342	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6934301	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7748837	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7749037	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs911723	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9365818	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv605232	chr6:164994771-165401154	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv521153	chr6:165279393-165343557	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv886925	chr6:165319631-165705488	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
4	esv3410490	chr6:165337362-165341860	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
5	esv3414452	chr6:165337862-165341160	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a
6	esv3446736	chr6:165338062-165341060	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:165333200-165346200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:165337800-165340400	Enhancers	Brain Cingulate Gyrus	brain
3	chr6:165338000-165340200	Enhancers	Brain Germinal Matrix	brain
4	chr6:165338200-165341200	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr6:165338200-165341400	Enhancers	Fetal Heart	heart
6	chr6:165338600-165339600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr6:165338600-165339600	Weak transcription	Brain Anterior Caudate	brain
8	chr6:165338600-165339600	Enhancers	Skeletal Muscle Female	skeletal muscle
9	chr6:165338600-165341200	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr6:165338600-165341200	Weak transcription	Psoas Muscle	Psoas
11	chr6:165338800-165339800	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr6:165338800-165340800	Weak transcription	Fetal Muscle Leg	muscle
13	chr6:165338800-165341200	Weak transcription	Fetal Muscle Trunk	muscle
14	chr6:165339000-165339600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr6:165339000-165340800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr6:165339000-165341000	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr6:165339000-165341200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr6:165339200-165339800	Enhancers	Brain Hippocampus Middle	brain
19	chr6:165339200-165340000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr6:165339200-165340000	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
21	chr6:165339200-165340000	ZNF genes & repeats	Fetal Kidney	kidney
22	chr6:165339200-165340000	Active TSS	Fetal Lung	lung
23	chr6:165339400-165339800	Flanking Active TSS	Fetal Brain Male	brain
24	chr6:165339400-165341000	Enhancers	Brain Substantia Nigra	brain
25	chr6:165339400-165341000	Enhancers	Fetal Brain Female	brain

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