Variant report

Variant	rs6944542
Chromosome Location	chr7:15573306-15573307
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10232565	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10232624	0.82[EUR][1000 genomes]
rs10232626	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10255042	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10256413	0.82[EUR][1000 genomes]
rs10261814	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10807779	0.82[EUR][1000 genomes]
rs12699727	0.82[EUR][1000 genomes]
rs12699731	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12699732	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1992024	0.82[EUR][1000 genomes]
rs1992025	0.82[EUR][1000 genomes]
rs2196392	0.87[EUR][1000 genomes]
rs2196394	0.84[EUR][1000 genomes]
rs2217866	0.85[EUR][1000 genomes]
rs6950435	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7801625	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032569	chr7:14905287-15597069	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1032866	chr7:15336831-15622515	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv887729	chr7:15444355-15580078	Enhancers Strong transcription Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv887730	chr7:15482111-15580078	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv887731	chr7:15486895-15580078	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv887732	chr7:15509843-15573306	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv887733	chr7:15521358-15573306	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv887734	chr7:15521358-15580078	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv1849669	chr7:15556866-15573306	Active TSS Enhancers Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6944542	BZW2	cis	parietal	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:15565600-15579000	Weak transcription	Liver	Liver
2	chr7:15573000-15573400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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