Variant report

Variant	rs6998440
Chromosome Location	chr8:38821665-38821666
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:38707845..38711256-chr8:38821077..38824253,4	MCF-7	breast:

Extended variants
information (count: 11 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10958812	0.88[LWK][hapmap];0.88[YRI][hapmap]
rs4301415	0.93[AFR][1000 genomes]
rs4404880	0.88[YRI][hapmap];0.93[AFR][1000 genomes]
rs4733958	0.88[AFR][1000 genomes]
rs6981759	0.84[AFR][1000 genomes]
rs6985572	0.96[LWK][hapmap];0.85[MKK][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs6996274	0.83[AFR][1000 genomes]
rs7007639	1.00[CEU][hapmap];0.83[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7015219	0.96[CEU][hapmap];0.89[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.89[TSI][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7295	0.84[MKK][hapmap]
rs9987126	1.00[LWK][hapmap];0.85[MKK][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs6998440	ADAM2	cis	cerebellum	SCAN
rs6998440	ADAM32	cis	parietal	SCAN

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:38795800-38830600	Weak transcription	Fetal Kidney	kidney
2	chr8:38797000-38831200	Weak transcription	Psoas Muscle	Psoas
3	chr8:38799000-38822000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr8:38800400-38822800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr8:38802800-38831000	Weak transcription	K562	blood
6	chr8:38810200-38831000	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr8:38811800-38823800	Weak transcription	Fetal Brain Male	brain
8	chr8:38814000-38826000	Weak transcription	Pancreas	Pancrea
9	chr8:38814800-38823200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr8:38815000-38823600	Weak transcription	Brain Angular Gyrus	brain
11	chr8:38815600-38823600	Strong transcription	Primary neutrophils fromperipheralblood	blood
12	chr8:38815800-38827200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr8:38816000-38822200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr8:38816000-38825600	Weak transcription	HSMMtube	muscle
15	chr8:38816200-38829600	Strong transcription	Monocytes-CD14+_RO01746	blood
16	chr8:38816200-38830800	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr8:38816400-38821800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr8:38816400-38823600	Weak transcription	Brain Cingulate Gyrus	brain
19	chr8:38816400-38823600	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr8:38816600-38823400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr8:38816600-38825200	Genic enhancers	Primary B cells from cord blood	blood
22	chr8:38816800-38831400	Weak transcription	Gastric	stomach
23	chr8:38817000-38826800	Weak transcription	Esophagus	oesophagus
24	chr8:38817400-38827000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr8:38817600-38823800	Weak transcription	Colonic Mucosa	Colon
26	chr8:38817600-38826800	Weak transcription	Brain Anterior Caudate	brain
27	chr8:38817600-38826800	Weak transcription	Small Intestine	intestine
28	chr8:38817600-38827400	Weak transcription	Rectal Smooth Muscle	rectum
29	chr8:38817600-38831600	Weak transcription	NHEK	skin
30	chr8:38817800-38823600	Weak transcription	Right Ventricle	heart
31	chr8:38817800-38823600	Weak transcription	A549	lung
32	chr8:38817800-38823800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr8:38817800-38825400	Weak transcription	Liver	Liver
34	chr8:38817800-38835200	Weak transcription	HepG2	liver
35	chr8:38818000-38823800	Weak transcription	Skeletal Muscle Female	skeletal muscle
36	chr8:38818000-38825200	Weak transcription	Fetal Intestine Large	intestine
37	chr8:38818200-38824800	Weak transcription	Rectal Mucosa Donor 29	rectum
38	chr8:38818600-38823600	Weak transcription	Colon Smooth Muscle	Colon
39	chr8:38818600-38823800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr8:38819000-38821800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr8:38819400-38826000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr8:38819400-38831200	Weak transcription	NH-A	brain
43	chr8:38819800-38822800	Weak transcription	Cortex derived primary cultured neurospheres	brain
44	chr8:38819800-38824200	Enhancers	Fetal Thymus	thymus
45	chr8:38819800-38824200	Enhancers	Thymus	Thymus
46	chr8:38819800-38825800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr8:38819800-38826200	Weak transcription	Aorta	Aorta
48	chr8:38820000-38823600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr8:38820000-38823800	Weak transcription	Fetal Intestine Small	intestine
50	chr8:38820000-38824200	Enhancers	Primary T killer naive cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links