Variant report

Variant	rs7007639
Chromosome Location	chr8:38820363-38820364
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:38808571..38813018-chr8:38815096..38820792,6	K562	blood:
2	chr8:38795940..38798621-chr8:38818956..38821342,2	K562	blood:
3	chr8:38819804..38821583-chr8:38825662..38827348,2	K562	blood:
4	chr8:38817416..38820372-chr8:38822881..38825576,2	K562	blood:

Variant related genes	Relation type
ENSG00000169499	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10958812	0.88[YRI][hapmap]
rs4301415	0.95[AFR][1000 genomes]
rs4404880	0.89[YRI][hapmap];0.95[AFR][1000 genomes]
rs4733958	0.87[AFR][1000 genomes]
rs6981759	0.86[AFR][1000 genomes]
rs6985572	1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs6996274	0.84[AFR][1000 genomes]
rs6998440	1.00[CEU][hapmap];0.83[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7015219	0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9987126	1.00[YRI][hapmap];0.92[AFR][1000 genomes]

No data

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:38795800-38830600	Weak transcription	Fetal Kidney	kidney
2	chr8:38797000-38831200	Weak transcription	Psoas Muscle	Psoas
3	chr8:38798800-38820600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr8:38799000-38820800	Strong transcription	Stomach Smooth Muscle	stomach
5	chr8:38799000-38822000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr8:38799600-38821200	Strong transcription	Hela-S3	cervix
7	chr8:38800400-38822800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr8:38802800-38831000	Weak transcription	K562	blood
9	chr8:38809400-38820600	Strong transcription	Placenta Amnion	Placenta Amnion
10	chr8:38810200-38831000	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr8:38811800-38823800	Weak transcription	Fetal Brain Male	brain
12	chr8:38814000-38826000	Weak transcription	Pancreas	Pancrea
13	chr8:38814800-38823200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr8:38815000-38820600	Genic enhancers	Primary B cells from peripheral blood	blood
15	chr8:38815000-38823600	Weak transcription	Brain Angular Gyrus	brain
16	chr8:38815600-38820600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr8:38815600-38820800	Strong transcription	Muscle Satellite Cultured Cells	--
18	chr8:38815600-38823600	Strong transcription	Primary neutrophils fromperipheralblood	blood
19	chr8:38815800-38827200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr8:38816000-38822200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr8:38816000-38825600	Weak transcription	HSMMtube	muscle
22	chr8:38816200-38820600	Strong transcription	Fetal Muscle Trunk	muscle
23	chr8:38816200-38820600	Strong transcription	HSMM	muscle
24	chr8:38816200-38820800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
25	chr8:38816200-38820800	Strong transcription	Osteobl	bone
26	chr8:38816200-38821000	Strong transcription	Primary monocytes fromperipheralblood	blood
27	chr8:38816200-38829600	Strong transcription	Monocytes-CD14+_RO01746	blood
28	chr8:38816200-38830800	Weak transcription	Skeletal Muscle Male	skeletal muscle
29	chr8:38816400-38821800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
30	chr8:38816400-38823600	Weak transcription	Brain Cingulate Gyrus	brain
31	chr8:38816400-38823600	Weak transcription	Brain Inferior Temporal Lobe	brain
32	chr8:38816600-38820600	Strong transcription	Placenta	Placenta
33	chr8:38816600-38823400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
34	chr8:38816600-38825200	Genic enhancers	Primary B cells from cord blood	blood
35	chr8:38816800-38831400	Weak transcription	Gastric	stomach
36	chr8:38817000-38826800	Weak transcription	Esophagus	oesophagus
37	chr8:38817400-38820400	Strong transcription	NHDF-Ad	bronchial
38	chr8:38817400-38827000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr8:38817600-38823800	Weak transcription	Colonic Mucosa	Colon
40	chr8:38817600-38826800	Weak transcription	Brain Anterior Caudate	brain
41	chr8:38817600-38826800	Weak transcription	Small Intestine	intestine
42	chr8:38817600-38827400	Weak transcription	Rectal Smooth Muscle	rectum
43	chr8:38817600-38831600	Weak transcription	NHEK	skin
44	chr8:38817800-38823600	Weak transcription	Right Ventricle	heart
45	chr8:38817800-38823600	Weak transcription	A549	lung
46	chr8:38817800-38823800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
47	chr8:38817800-38825400	Weak transcription	Liver	Liver
48	chr8:38817800-38835200	Weak transcription	HepG2	liver
49	chr8:38818000-38823800	Weak transcription	Skeletal Muscle Female	skeletal muscle
50	chr8:38818000-38825200	Weak transcription	Fetal Intestine Large	intestine

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