Variant report

Variant	rs6985572
Chromosome Location	chr8:38826365-38826366
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 7 )

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10093975	0.84[CHD][hapmap]
rs10105311	0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs10958812	0.82[ASW][hapmap];0.84[CEU][hapmap];0.95[GIH][hapmap];0.84[LWK][hapmap];0.85[MEX][hapmap];0.86[MKK][hapmap];0.82[TSI][hapmap];0.88[YRI][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28641150	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4301415	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4404880	0.88[CEU][hapmap];0.85[CHB][hapmap];0.88[YRI][hapmap];0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4733893	0.89[EUR][1000 genomes]
rs4733894	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4733897	0.85[CEU][hapmap];0.88[JPT][hapmap];0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4733958	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4733959	0.81[CEU][hapmap];0.82[JPT][hapmap];0.93[TSI][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4733964	0.85[CHD][hapmap];0.88[JPT][hapmap];0.82[MEX][hapmap];0.81[TSI][hapmap];0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6474515	0.81[ASN][1000 genomes]
rs6474516	0.85[CHD][hapmap];0.88[JPT][hapmap];0.86[MEX][hapmap];0.86[TSI][hapmap];0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs6981759	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6996274	0.85[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs6998440	0.96[LWK][hapmap];0.85[MKK][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs7000059	0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7001985	0.86[CHB][hapmap]
rs7007639	1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs7010131	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7295	0.88[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.93[TSI][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7823125	0.81[CHB][hapmap];0.87[CHD][hapmap]
rs7831735	0.84[CHD][hapmap]
rs7836422	0.83[CHD][hapmap]
rs7840270	0.81[CHD][hapmap]
rs9692838	0.85[EUR][1000 genomes]
rs9987126	1.00[ASW][hapmap];1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9987222	0.89[CHD][hapmap]

mRNA abundance (count:7)

SNP	Gene	Cis/trans	Tissue	Source
rs6985572	ADAM32	cis	parietal	SCAN
rs6985572	DDHD2	cis	cerebellum	SCAN
rs6985572	TM2D2	cis	cerebellum	SCAN
rs6985572	ADAM32	cis	cerebellum	SCAN
rs6985572	TM2D2	cis	Whole Blood	GTEx
rs6985572	PLEKHA2	cis	lymphoblastoid	seeQTL
rs6985572	TM2D2	cis	parietal	SCAN

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:38795800-38830600	Weak transcription	Fetal Kidney	kidney
2	chr8:38797000-38831200	Weak transcription	Psoas Muscle	Psoas
3	chr8:38802800-38831000	Weak transcription	K562	blood
4	chr8:38810200-38831000	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr8:38815800-38827200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr8:38816200-38829600	Strong transcription	Monocytes-CD14+_RO01746	blood
7	chr8:38816200-38830800	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr8:38816800-38831400	Weak transcription	Gastric	stomach
9	chr8:38817000-38826800	Weak transcription	Esophagus	oesophagus
10	chr8:38817400-38827000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr8:38817600-38826800	Weak transcription	Brain Anterior Caudate	brain
12	chr8:38817600-38826800	Weak transcription	Small Intestine	intestine
13	chr8:38817600-38827400	Weak transcription	Rectal Smooth Muscle	rectum
14	chr8:38817600-38831600	Weak transcription	NHEK	skin
15	chr8:38817800-38835200	Weak transcription	HepG2	liver
16	chr8:38819400-38831200	Weak transcription	NH-A	brain
17	chr8:38820400-38827000	Weak transcription	NHDF-Ad	bronchial
18	chr8:38820600-38826800	Weak transcription	Placenta Amnion	Placenta Amnion
19	chr8:38820600-38827000	Weak transcription	Lung	lung
20	chr8:38822200-38827400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr8:38823800-38830400	Weak transcription	Brain Germinal Matrix	brain
22	chr8:38824000-38827200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
23	chr8:38824000-38846400	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr8:38824200-38826600	Weak transcription	Colon Smooth Muscle	Colon
25	chr8:38824200-38826600	Weak transcription	Fetal Thymus	thymus
26	chr8:38824200-38826600	Weak transcription	Rectal Mucosa Donor 31	rectum
27	chr8:38824200-38826800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
28	chr8:38824200-38826800	Weak transcription	Duodenum Smooth Muscle	Duodenum
29	chr8:38824200-38826800	Weak transcription	Thymus	Thymus
30	chr8:38824200-38827000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
31	chr8:38824200-38827000	Weak transcription	Colonic Mucosa	Colon
32	chr8:38824200-38827200	Weak transcription	Skeletal Muscle Female	skeletal muscle
33	chr8:38824200-38827400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
34	chr8:38824200-38829000	Strong transcription	Hela-S3	cervix
35	chr8:38824200-38829800	Weak transcription	Fetal Brain Male	brain
36	chr8:38824200-38831400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
37	chr8:38824200-38831800	Strong transcription	Primary T cells fromperipheralblood	blood
38	chr8:38824200-38834000	Weak transcription	A549	lung
39	chr8:38824200-38847800	Weak transcription	Brain Substantia Nigra	brain
40	chr8:38824200-38848400	Weak transcription	Brain Angular Gyrus	brain
41	chr8:38824200-38848800	Weak transcription	Brain Cingulate Gyrus	brain
42	chr8:38824400-38831000	Strong transcription	Primary B cells from peripheral blood	blood
43	chr8:38824600-38829200	Strong transcription	Primary monocytes fromperipheralblood	blood
44	chr8:38824800-38826400	Enhancers	NHLF	lung
45	chr8:38824800-38829000	Strong transcription	Rectal Mucosa Donor 29	rectum
46	chr8:38824800-38830000	Strong transcription	Primary T helper cells PMA-I stimulated	--
47	chr8:38824800-38831000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
48	chr8:38825000-38829000	Strong transcription	Primary hematopoietic stem cells	blood
49	chr8:38825000-38829000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
50	chr8:38825000-38829000	Strong transcription	Dnd41	blood

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