Variant report

Variant	rs9987222
Chromosome Location	chr8:38826768-38826769
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 6 )

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10091297	0.89[ASN][1000 genomes]
rs10093975	0.94[CHB][hapmap];0.93[CHD][hapmap];0.91[GIH][hapmap];0.81[JPT][hapmap];0.87[MEX][hapmap];0.90[ASN][1000 genomes]
rs10095616	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28372047	0.80[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs28523000	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs28579045	0.83[ASN][1000 genomes]
rs4489297	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs4733962	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56018450	0.81[ASN][1000 genomes]
rs6474514	0.89[CEU][hapmap];0.83[CHD][hapmap];0.97[GIH][hapmap];0.82[MEX][hapmap];0.93[TSI][hapmap];0.87[EUR][1000 genomes]
rs6474517	0.83[ASN][1000 genomes]
rs66513029	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6985572	0.89[CHD][hapmap]
rs6991968	0.94[CHB][hapmap];0.87[CHD][hapmap];0.91[GIH][hapmap];0.81[JPT][hapmap];0.87[MEX][hapmap];0.89[ASN][1000 genomes]
rs7001985	0.85[CEU][hapmap];0.87[CHB][hapmap];0.85[JPT][hapmap];0.80[EUR][1000 genomes]
rs7006414	0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs7295	0.89[CHD][hapmap]
rs7814264	0.90[ASN][1000 genomes]
rs7821437	0.82[CHB][hapmap]
rs7823125	0.88[CEU][hapmap];0.88[CHB][hapmap];0.96[CHD][hapmap];0.91[GIH][hapmap];0.80[JPT][hapmap];0.91[MEX][hapmap];0.82[MKK][hapmap];0.83[TSI][hapmap];0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7831735	0.88[CEU][hapmap];0.88[CHB][hapmap];0.93[CHD][hapmap];0.91[GIH][hapmap];0.81[JPT][hapmap];0.87[MEX][hapmap];0.90[ASN][1000 genomes]
rs7832975	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7833430	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7836422	0.84[CEU][hapmap];0.88[CHB][hapmap];0.93[CHD][hapmap];0.94[GIH][hapmap];0.81[JPT][hapmap];0.80[TSI][hapmap];0.80[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7840270	0.88[CHB][hapmap];0.90[CHD][hapmap];0.91[GIH][hapmap];0.81[JPT][hapmap];0.86[MEX][hapmap];0.90[ASN][1000 genomes]
rs7842543	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7842732	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7844927	0.83[ASN][1000 genomes]
rs9650347	0.83[CHB][hapmap]
rs9987126	0.82[CHB][hapmap];0.89[CHD][hapmap]

mRNA abundance (count:6)

SNP	Gene	Cis/trans	Tissue	Source
rs9987222	ADAM32	cis	Nerve Tibial	GTEx
rs9987222	TM2D2	cis	multi-tissue	Pritchard
rs9987222	TM2D2	cis	cerebellum	SCAN
rs9987222	ADAM32	cis	Adipose Subcutaneous	GTEx
rs9987222	HTRA4	cis	multi-tissue	Pritchard
rs9987222	TM2D2	cis	parietal	SCAN

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:38795800-38830600	Weak transcription	Fetal Kidney	kidney
2	chr8:38797000-38831200	Weak transcription	Psoas Muscle	Psoas
3	chr8:38802800-38831000	Weak transcription	K562	blood
4	chr8:38810200-38831000	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr8:38815800-38827200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr8:38816200-38829600	Strong transcription	Monocytes-CD14+_RO01746	blood
7	chr8:38816200-38830800	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr8:38816800-38831400	Weak transcription	Gastric	stomach
9	chr8:38817000-38826800	Weak transcription	Esophagus	oesophagus
10	chr8:38817400-38827000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr8:38817600-38826800	Weak transcription	Brain Anterior Caudate	brain
12	chr8:38817600-38826800	Weak transcription	Small Intestine	intestine
13	chr8:38817600-38827400	Weak transcription	Rectal Smooth Muscle	rectum
14	chr8:38817600-38831600	Weak transcription	NHEK	skin
15	chr8:38817800-38835200	Weak transcription	HepG2	liver
16	chr8:38819400-38831200	Weak transcription	NH-A	brain
17	chr8:38820400-38827000	Weak transcription	NHDF-Ad	bronchial
18	chr8:38820600-38826800	Weak transcription	Placenta Amnion	Placenta Amnion
19	chr8:38820600-38827000	Weak transcription	Lung	lung
20	chr8:38822200-38827400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr8:38823800-38830400	Weak transcription	Brain Germinal Matrix	brain
22	chr8:38824000-38827200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
23	chr8:38824000-38846400	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr8:38824200-38826800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
25	chr8:38824200-38826800	Weak transcription	Duodenum Smooth Muscle	Duodenum
26	chr8:38824200-38826800	Weak transcription	Thymus	Thymus
27	chr8:38824200-38827000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
28	chr8:38824200-38827000	Weak transcription	Colonic Mucosa	Colon
29	chr8:38824200-38827200	Weak transcription	Skeletal Muscle Female	skeletal muscle
30	chr8:38824200-38827400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
31	chr8:38824200-38829000	Strong transcription	Hela-S3	cervix
32	chr8:38824200-38829800	Weak transcription	Fetal Brain Male	brain
33	chr8:38824200-38831400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
34	chr8:38824200-38831800	Strong transcription	Primary T cells fromperipheralblood	blood
35	chr8:38824200-38834000	Weak transcription	A549	lung
36	chr8:38824200-38847800	Weak transcription	Brain Substantia Nigra	brain
37	chr8:38824200-38848400	Weak transcription	Brain Angular Gyrus	brain
38	chr8:38824200-38848800	Weak transcription	Brain Cingulate Gyrus	brain
39	chr8:38824400-38831000	Strong transcription	Primary B cells from peripheral blood	blood
40	chr8:38824600-38829200	Strong transcription	Primary monocytes fromperipheralblood	blood
41	chr8:38824800-38829000	Strong transcription	Rectal Mucosa Donor 29	rectum
42	chr8:38824800-38830000	Strong transcription	Primary T helper cells PMA-I stimulated	--
43	chr8:38824800-38831000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
44	chr8:38825000-38829000	Strong transcription	Primary hematopoietic stem cells	blood
45	chr8:38825000-38829000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
46	chr8:38825000-38829000	Strong transcription	Dnd41	blood
47	chr8:38825000-38831400	Strong transcription	Primary T helper cells fromperipheralblood	blood
48	chr8:38825000-38833200	Strong transcription	Osteobl	bone
49	chr8:38825200-38829000	Strong transcription	Fetal Intestine Large	intestine
50	chr8:38825200-38830400	Strong transcription	Primary B cells from cord blood	blood

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