Variant report

Variant	rs7001985
Chromosome Location	chr8:38830050-38830051
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TM2D2-1	chr8:38829953-38830530	ENSG00000253645.1
2	lnc-HTRA4-1	chr8:38829751-38830081	NONHSAT126136

Extended variants
information (count: 31 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10093975	0.85[CEU][hapmap];0.93[CHB][hapmap];0.95[JPT][hapmap];0.95[YRI][hapmap]
rs10441608	0.87[CHB][hapmap];0.86[YRI][hapmap]
rs10809000	0.86[JPT][hapmap];0.87[YRI][hapmap]
rs11784624	0.81[JPT][hapmap];0.86[YRI][hapmap]
rs12676405	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs4075849	0.82[JPT][hapmap]
rs4269506	0.86[YRI][hapmap]
rs4517088	0.81[JPT][hapmap];0.86[YRI][hapmap]
rs4615534	0.86[YRI][hapmap]
rs4733962	0.88[CEU][hapmap]
rs6474514	0.81[CEU][hapmap];0.86[CHB][hapmap];0.83[YRI][hapmap]
rs6474525	0.86[JPT][hapmap];0.87[YRI][hapmap]
rs6985572	0.86[CHB][hapmap]
rs6991383	0.85[JPT][hapmap];0.86[YRI][hapmap]
rs6991968	0.85[CEU][hapmap];0.93[CHB][hapmap];0.95[JPT][hapmap]
rs7015505	0.81[JPT][hapmap];0.86[YRI][hapmap]
rs7295	0.86[CHB][hapmap]
rs7818363	0.86[JPT][hapmap];0.87[YRI][hapmap]
rs7821437	0.83[CHB][hapmap];0.86[JPT][hapmap]
rs7823125	1.00[CHB][hapmap];0.95[JPT][hapmap];0.83[YRI][hapmap]
rs7826010	0.85[ASN][1000 genomes]
rs7830323	0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs7831735	0.87[CHB][hapmap];0.95[JPT][hapmap]
rs7832284	0.83[CHB][hapmap];0.81[JPT][hapmap];0.87[YRI][hapmap]
rs7833430	0.80[ASN][1000 genomes]
rs7834967	0.86[JPT][hapmap];0.87[YRI][hapmap]
rs7836422	0.87[CHB][hapmap];0.95[JPT][hapmap];0.91[YRI][hapmap]
rs7840044	0.85[JPT][hapmap];0.91[YRI][hapmap]
rs7840270	0.85[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap]
rs9650347	0.85[JPT][hapmap];0.86[YRI][hapmap]
rs9987222	0.85[CEU][hapmap];0.87[CHB][hapmap];0.85[JPT][hapmap];0.80[EUR][1000 genomes]

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs7001985	ADAM32	cis	Adipose Subcutaneous	GTEx
rs7001985	PLEKHA2	Cis_1M	lymphoblastoid	RTeQTL
rs7001985	ADAM32	cis	Nerve Tibial	GTEx
rs7001985	TM2D2	cis	multi-tissue	Pritchard

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:38795800-38830600	Weak transcription	Fetal Kidney	kidney
2	chr8:38797000-38831200	Weak transcription	Psoas Muscle	Psoas
3	chr8:38802800-38831000	Weak transcription	K562	blood
4	chr8:38810200-38831000	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr8:38816200-38830800	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr8:38816800-38831400	Weak transcription	Gastric	stomach
7	chr8:38817600-38831600	Weak transcription	NHEK	skin
8	chr8:38817800-38835200	Weak transcription	HepG2	liver
9	chr8:38819400-38831200	Weak transcription	NH-A	brain
10	chr8:38823800-38830400	Weak transcription	Brain Germinal Matrix	brain
11	chr8:38824000-38846400	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr8:38824200-38831400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr8:38824200-38831800	Strong transcription	Primary T cells fromperipheralblood	blood
14	chr8:38824200-38834000	Weak transcription	A549	lung
15	chr8:38824200-38847800	Weak transcription	Brain Substantia Nigra	brain
16	chr8:38824200-38848400	Weak transcription	Brain Angular Gyrus	brain
17	chr8:38824200-38848800	Weak transcription	Brain Cingulate Gyrus	brain
18	chr8:38824400-38831000	Strong transcription	Primary B cells from peripheral blood	blood
19	chr8:38824800-38831000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
20	chr8:38825000-38831400	Strong transcription	Primary T helper cells fromperipheralblood	blood
21	chr8:38825000-38833200	Strong transcription	Osteobl	bone
22	chr8:38825200-38830400	Strong transcription	Primary B cells from cord blood	blood
23	chr8:38825200-38830600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
24	chr8:38825200-38831200	Weak transcription	Fetal Heart	heart
25	chr8:38825200-38831800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
26	chr8:38825200-38833000	Strong transcription	Primary T cells from cord blood	blood
27	chr8:38825400-38831000	Strong transcription	GM12878-XiMat	blood
28	chr8:38825400-38831800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
29	chr8:38825800-38831400	Strong transcription	Duodenum Mucosa	Duodenum
30	chr8:38826000-38830200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr8:38826000-38831400	Strong transcription	Fetal Muscle Leg	muscle
32	chr8:38826800-38830200	Strong transcription	Duodenum Smooth Muscle	Duodenum
33	chr8:38827200-38833200	Strong transcription	Muscle Satellite Cultured Cells	--
34	chr8:38827400-38832800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr8:38827600-38831000	Weak transcription	Ovary	ovary
36	chr8:38827600-38831400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr8:38827600-38831800	Weak transcription	Pancreas	Pancrea
38	chr8:38827800-38831000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr8:38827800-38831400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr8:38827800-38831600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr8:38827800-38831600	Weak transcription	Esophagus	oesophagus
42	chr8:38827800-38831800	Weak transcription	Colonic Mucosa	Colon
43	chr8:38827800-38847600	Weak transcription	Small Intestine	intestine
44	chr8:38828000-38830400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
45	chr8:38828000-38830400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
46	chr8:38828000-38830600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr8:38828000-38831000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr8:38828000-38831200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
49	chr8:38828000-38831800	Weak transcription	Brain Anterior Caudate	brain
50	chr8:38828000-38831800	Weak transcription	Lung	lung

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