Variant report

Variant	rs7821437
Chromosome Location	chr8:38898651-38898652
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:38898390..38901319-chr8:38947288..38950284,2	K562	blood:

Variant related genes	Relation type
ENSG00000168615	Chromatin interaction

Extended variants
information (count: 55 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10092021	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10093975	0.88[CHB][hapmap];0.90[JPT][hapmap]
rs10113077	0.84[CHB][hapmap]
rs10441608	0.88[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10809000	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10809001	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11784624	0.85[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11985898	0.81[JPT][hapmap]
rs12156418	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs28434452	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28563781	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28564878	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs28579045	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28690874	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28868044	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4075849	0.86[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4130393	0.92[YRI][hapmap]
rs4269506	0.85[CEU][hapmap];0.86[JPT][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4495395	0.82[CHB][hapmap]
rs4517088	0.85[CEU][hapmap];0.90[JPT][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4615534	0.85[CEU][hapmap];0.91[JPT][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4733904	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4733971	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs55797573	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs56018450	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs59118660	0.89[EUR][1000 genomes]
rs59814883	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6474517	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6474525	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs67200247	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6991383	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6991968	0.88[CHB][hapmap];0.90[JPT][hapmap]
rs6997721	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7001985	0.83[CHB][hapmap];0.86[JPT][hapmap]
rs7006535	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7013358	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7015505	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7464810	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7818363	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7823125	0.82[CHB][hapmap];0.90[JPT][hapmap]
rs7830975	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7831735	0.94[CHB][hapmap];0.90[JPT][hapmap];0.85[YRI][hapmap]
rs7832284	0.86[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7832578	0.82[CHB][hapmap]
rs7834967	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7835604	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7835608	0.92[YRI][hapmap]
rs7836422	0.94[CHB][hapmap];0.90[JPT][hapmap]
rs7838874	0.82[CHB][hapmap]
rs7840044	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7840270	0.82[CHB][hapmap];0.90[JPT][hapmap];0.85[YRI][hapmap]
rs7844927	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9650347	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9987222	0.82[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3445313	chr8:38886844-38936643	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs7821437	ADAM32	cis	Adipose Subcutaneous	GTEx
rs7821437	ADAM32	cis	Artery Tibial	GTEx
rs7821437	ADAM32	cis	Nerve Tibial	GTEx

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:38869600-38902800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr8:38882000-38913600	Weak transcription	Fetal Kidney	kidney
3	chr8:38883000-38913000	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr8:38885000-38899400	Weak transcription	Liver	Liver
5	chr8:38885200-38902800	Weak transcription	Psoas Muscle	Psoas
6	chr8:38885400-38904400	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr8:38885600-38903600	Weak transcription	Fetal Brain Female	brain
8	chr8:38885800-38911200	Weak transcription	Ovary	ovary
9	chr8:38886000-38899400	Weak transcription	Brain Substantia Nigra	brain
10	chr8:38886400-38904400	Weak transcription	Fetal Muscle Trunk	muscle
11	chr8:38887400-38911200	Weak transcription	Aorta	Aorta
12	chr8:38888000-38899600	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chr8:38888200-38904400	Weak transcription	GM12878-XiMat	blood
14	chr8:38888400-38905400	Weak transcription	Primary B cells from cord blood	blood
15	chr8:38888800-38901600	Weak transcription	Fetal Brain Male	brain
16	chr8:38889000-38899600	Weak transcription	Fetal Lung	lung
17	chr8:38890000-38904400	Weak transcription	Gastric	stomach
18	chr8:38890200-38904400	Weak transcription	Esophagus	oesophagus
19	chr8:38890200-38911200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr8:38890200-38914400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr8:38890400-38903400	Weak transcription	Fetal Muscle Leg	muscle
22	chr8:38890400-38904200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr8:38890400-38904200	Weak transcription	Fetal Intestine Small	intestine
24	chr8:38890400-38904200	Weak transcription	Lung	lung
25	chr8:38890400-38919800	Weak transcription	H1 Cell Line	embryonic stem cell
26	chr8:38892600-38901000	Weak transcription	Dnd41	blood
27	chr8:38895600-38899600	Weak transcription	HUES48 Cell Line	embryonic stem cell
28	chr8:38895600-38902000	Weak transcription	Right Ventricle	heart
29	chr8:38895600-38911200	Weak transcription	Fetal Stomach	stomach
30	chr8:38895800-38899400	Weak transcription	Brain Angular Gyrus	brain
31	chr8:38895800-38899600	Weak transcription	Fetal Heart	heart
32	chr8:38895800-38901600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
33	chr8:38896000-38901600	Weak transcription	HUES6 Cell Line	embryonic stem cell
34	chr8:38896000-38918400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
35	chr8:38896000-38925000	Weak transcription	H9 Cell Line	embryonic stem cell
36	chr8:38896200-38899800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr8:38896200-38900600	Weak transcription	Primary neutrophils fromperipheralblood	blood
38	chr8:38896200-38900800	Genic enhancers	HSMM	muscle
39	chr8:38896200-38901800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
40	chr8:38896200-38907600	Weak transcription	Duodenum Mucosa	Duodenum
41	chr8:38896200-38911200	Weak transcription	Placenta	Placenta
42	chr8:38896200-38911200	Weak transcription	Left Ventricle	heart
43	chr8:38896200-38916000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
44	chr8:38896400-38900200	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr8:38896400-38916400	Weak transcription	K562	blood
46	chr8:38896600-38899400	Weak transcription	HepG2	liver
47	chr8:38896600-38899600	Weak transcription	Brain Hippocampus Middle	brain
48	chr8:38896600-38905200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
49	chr8:38896600-38912800	Weak transcription	Skeletal Muscle Female	skeletal muscle
50	chr8:38896800-38899400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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