Variant report

Variant	rs7006535
Chromosome Location	chr8:38885705-38885706
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10092021	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10093975	0.81[ASN][1000 genomes]
rs10441608	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10809000	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10809001	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11784624	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12156418	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs28434452	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28563781	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28564878	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs28579045	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28690874	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28868044	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4075849	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4269506	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4517088	0.80[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4615534	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4733904	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4733971	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs55797573	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs56018450	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs59118660	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs59814883	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6474517	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6474525	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs67200247	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6991383	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6991968	0.82[ASN][1000 genomes]
rs6997721	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7006414	0.80[AMR][1000 genomes]
rs7013358	0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7015505	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7464810	0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7818363	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7821437	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7830975	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7831735	0.81[ASN][1000 genomes]
rs7832284	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7834967	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7835604	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7836422	0.80[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs7840044	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7840270	0.81[ASN][1000 genomes]
rs7844927	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9650347	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs7006535	ADAM32	cis	Adipose Subcutaneous	GTEx
rs7006535	ADAM32	cis	Artery Tibial	GTEx
rs7006535	ADAM32	cis	Nerve Tibial	GTEx

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:38856600-38889600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr8:38856800-38889600	Weak transcription	Colonic Mucosa	Colon
3	chr8:38865000-38887200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr8:38865000-38889600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr8:38865200-38887400	Strong transcription	HUES64 Cell Line	embryonic stem cell
6	chr8:38865400-38886000	Strong transcription	Primary neutrophils fromperipheralblood	blood
7	chr8:38865400-38887800	Strong transcription	HSMM	muscle
8	chr8:38865400-38888800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr8:38865600-38888200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr8:38865600-38889000	Strong transcription	Primary monocytes fromperipheralblood	blood
11	chr8:38866000-38888400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr8:38869600-38902800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr8:38869800-38888400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr8:38870000-38886400	Weak transcription	Pancreas	Pancrea
15	chr8:38872000-38886200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr8:38872000-38890400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
17	chr8:38872400-38888200	Strong transcription	Fetal Intestine Large	intestine
18	chr8:38872600-38889600	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr8:38872600-38889800	Weak transcription	Primary B cells from peripheral blood	blood
20	chr8:38872800-38888000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr8:38874200-38886400	Strong transcription	Fetal Muscle Trunk	muscle
22	chr8:38874400-38888800	Strong transcription	Hela-S3	cervix
23	chr8:38875000-38888400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr8:38875200-38888800	Strong transcription	Monocytes-CD14+_RO01746	blood
25	chr8:38875400-38886200	Weak transcription	Right Atrium	heart
26	chr8:38875400-38886600	Weak transcription	Gastric	stomach
27	chr8:38875400-38886800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr8:38875400-38889400	Weak transcription	Esophagus	oesophagus
29	chr8:38875400-38890200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
30	chr8:38875800-38895400	Weak transcription	Brain Angular Gyrus	brain
31	chr8:38876400-38888000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr8:38876600-38888000	Strong transcription	Placenta	Placenta
33	chr8:38877400-38885800	Strong transcription	Fetal Lung	lung
34	chr8:38877400-38887400	Strong transcription	Fetal Muscle Leg	muscle
35	chr8:38878400-38886800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
36	chr8:38878600-38885800	Strong transcription	Fetal Stomach	stomach
37	chr8:38878600-38886000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
38	chr8:38878600-38888600	Strong transcription	Dnd41	blood
39	chr8:38878800-38886800	Strong transcription	HepG2	liver
40	chr8:38879000-38885800	Strong transcription	Stomach Smooth Muscle	stomach
41	chr8:38879000-38886800	Strong transcription	HUES48 Cell Line	embryonic stem cell
42	chr8:38879000-38887200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
43	chr8:38879000-38888000	Strong transcription	HUES6 Cell Line	embryonic stem cell
44	chr8:38879000-38888400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
45	chr8:38879200-38887000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
46	chr8:38879200-38887200	Strong transcription	Placenta Amnion	Placenta Amnion
47	chr8:38879200-38887800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr8:38879200-38888000	Strong transcription	Duodenum Smooth Muscle	Duodenum
49	chr8:38879200-38888400	Strong transcription	Cortex derived primary cultured neurospheres	brain
50	chr8:38879800-38888000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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