Variant report

Variant	rs7835604
Chromosome Location	chr8:38890309-38890310
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:38854112..38856391-chr8:38888365..38892463,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000168615	Chromatin interaction
ENSG00000169490	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10092021	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10441608	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10809000	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10809001	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11784624	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12156418	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28434452	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28563781	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28564878	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28579045	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28690874	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28868044	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4075849	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4269506	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4517088	0.80[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4615534	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4733904	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4733971	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs55797573	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs56018450	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs59118660	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs59814883	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6474517	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6474525	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs67200247	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6991383	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6991968	0.81[ASN][1000 genomes]
rs6997721	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7006414	0.80[AMR][1000 genomes]
rs7006535	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7013358	0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7015505	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7464810	0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7818363	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7821437	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7830975	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7832284	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7834967	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7836422	0.80[AMR][1000 genomes]
rs7840044	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7844927	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9650347	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3445313	chr8:38886844-38936643	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs7835604	ADAM32	cis	Adipose Subcutaneous	GTEx
rs7835604	ADAM32	cis	Artery Tibial	GTEx
rs7835604	ADAM32	cis	Nerve Tibial	GTEx

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:38869600-38902800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr8:38872000-38890400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
3	chr8:38875800-38895400	Weak transcription	Brain Angular Gyrus	brain
4	chr8:38882000-38913600	Weak transcription	Fetal Kidney	kidney
5	chr8:38882800-38895000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr8:38882800-38895000	Weak transcription	Rectal Smooth Muscle	rectum
7	chr8:38883000-38895000	Weak transcription	Spleen	Spleen
8	chr8:38883000-38913000	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr8:38885000-38895400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr8:38885000-38895400	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr8:38885000-38896400	Weak transcription	Brain Cingulate Gyrus	brain
12	chr8:38885000-38899400	Weak transcription	Liver	Liver
13	chr8:38885200-38895200	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr8:38885200-38895400	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr8:38885200-38902800	Weak transcription	Psoas Muscle	Psoas
16	chr8:38885400-38904400	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr8:38885600-38903600	Weak transcription	Fetal Brain Female	brain
18	chr8:38885800-38895200	Weak transcription	Stomach Smooth Muscle	stomach
19	chr8:38885800-38911200	Weak transcription	Ovary	ovary
20	chr8:38886000-38894200	Weak transcription	HSMMtube	muscle
21	chr8:38886000-38899400	Weak transcription	Brain Substantia Nigra	brain
22	chr8:38886400-38890600	Strong transcription	Primary neutrophils fromperipheralblood	blood
23	chr8:38886400-38895000	Weak transcription	Adipose Nuclei	Adipose
24	chr8:38886400-38895000	Weak transcription	Small Intestine	intestine
25	chr8:38886400-38895200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr8:38886400-38904400	Weak transcription	Fetal Muscle Trunk	muscle
27	chr8:38886600-38895200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
28	chr8:38887000-38895200	Weak transcription	Brain Anterior Caudate	brain
29	chr8:38887200-38895000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
30	chr8:38887400-38895200	Weak transcription	Colon Smooth Muscle	Colon
31	chr8:38887400-38911200	Weak transcription	Aorta	Aorta
32	chr8:38887800-38890400	Weak transcription	HSMM	muscle
33	chr8:38887800-38890600	Enhancers	HepG2	liver
34	chr8:38887800-38895400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr8:38887800-38895400	Weak transcription	Brain Hippocampus Middle	brain
36	chr8:38888000-38890600	Enhancers	Fetal Heart	heart
37	chr8:38888000-38891600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr8:38888000-38891600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr8:38888000-38895000	Weak transcription	Placenta	Placenta
40	chr8:38888000-38895400	Weak transcription	Duodenum Mucosa	Duodenum
41	chr8:38888000-38895600	Weak transcription	Primary hematopoietic stem cells	blood
42	chr8:38888000-38899600	Weak transcription	Duodenum Smooth Muscle	Duodenum
43	chr8:38888200-38890400	Enhancers	Stomach Mucosa	stomach
44	chr8:38888200-38895200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr8:38888200-38897000	Weak transcription	Fetal Intestine Large	intestine
46	chr8:38888200-38904400	Weak transcription	GM12878-XiMat	blood
47	chr8:38888400-38890400	Enhancers	HUVEC	blood vessel
48	chr8:38888400-38893800	Weak transcription	Cortex derived primary cultured neurospheres	brain
49	chr8:38888400-38895400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr8:38888400-38895800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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