Variant report

Variant	rs7830975
Chromosome Location	chr8:38889527-38889528
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:38854112..38856391-chr8:38888365..38892463,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000169490	Chromatin interaction
ENSG00000168615	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10092021	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10441608	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10809000	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10809001	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11784624	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12156418	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs28434452	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs28563781	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs28564878	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs28579045	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs28690874	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs28868044	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4075849	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4269506	0.83[EUR][1000 genomes]
rs4517088	0.83[EUR][1000 genomes]
rs4615534	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4733904	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4733971	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs55797573	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs56018450	0.82[AMR][1000 genomes]
rs59118660	0.83[EUR][1000 genomes]
rs59814883	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6474517	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6474525	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs67200247	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6991383	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6997721	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7006535	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7013358	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7015505	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7464810	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7818363	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7821437	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7832284	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7834967	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7835604	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7840044	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7844927	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9650347	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3445313	chr8:38886844-38936643	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs7830975	ADAM32	cis	Adipose Subcutaneous	GTEx
rs7830975	ADAM32	cis	Nerve Tibial	GTEx
rs7830975	ADAM32	cis	Artery Tibial	GTEx

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:38856600-38889600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr8:38856800-38889600	Weak transcription	Colonic Mucosa	Colon
3	chr8:38865000-38889600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr8:38869600-38902800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr8:38872000-38890400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
6	chr8:38872600-38889600	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr8:38872600-38889800	Weak transcription	Primary B cells from peripheral blood	blood
8	chr8:38875400-38890200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr8:38875800-38895400	Weak transcription	Brain Angular Gyrus	brain
10	chr8:38882000-38913600	Weak transcription	Fetal Kidney	kidney
11	chr8:38882400-38889600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr8:38882800-38895000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr8:38882800-38895000	Weak transcription	Rectal Smooth Muscle	rectum
14	chr8:38883000-38889600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr8:38883000-38889600	Weak transcription	Lung	lung
16	chr8:38883000-38895000	Weak transcription	Spleen	Spleen
17	chr8:38883000-38913000	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr8:38883200-38889800	Weak transcription	Fetal Intestine Small	intestine
19	chr8:38883600-38889800	Weak transcription	Right Ventricle	heart
20	chr8:38885000-38895400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr8:38885000-38895400	Weak transcription	Rectal Mucosa Donor 31	rectum
22	chr8:38885000-38896400	Weak transcription	Brain Cingulate Gyrus	brain
23	chr8:38885000-38899400	Weak transcription	Liver	Liver
24	chr8:38885200-38895200	Weak transcription	Skeletal Muscle Female	skeletal muscle
25	chr8:38885200-38895400	Weak transcription	Skeletal Muscle Male	skeletal muscle
26	chr8:38885200-38902800	Weak transcription	Psoas Muscle	Psoas
27	chr8:38885400-38889600	Weak transcription	H1 Cell Line	embryonic stem cell
28	chr8:38885400-38904400	Weak transcription	Brain Inferior Temporal Lobe	brain
29	chr8:38885600-38903600	Weak transcription	Fetal Brain Female	brain
30	chr8:38885800-38889600	Weak transcription	Fetal Stomach	stomach
31	chr8:38885800-38889600	Weak transcription	Left Ventricle	heart
32	chr8:38885800-38895200	Weak transcription	Stomach Smooth Muscle	stomach
33	chr8:38885800-38911200	Weak transcription	Ovary	ovary
34	chr8:38886000-38894200	Weak transcription	HSMMtube	muscle
35	chr8:38886000-38899400	Weak transcription	Brain Substantia Nigra	brain
36	chr8:38886400-38889600	Strong transcription	Muscle Satellite Cultured Cells	--
37	chr8:38886400-38890000	Weak transcription	H9 Cell Line	embryonic stem cell
38	chr8:38886400-38890600	Strong transcription	Primary neutrophils fromperipheralblood	blood
39	chr8:38886400-38895000	Weak transcription	Adipose Nuclei	Adipose
40	chr8:38886400-38895000	Weak transcription	Small Intestine	intestine
41	chr8:38886400-38895200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr8:38886400-38904400	Weak transcription	Fetal Muscle Trunk	muscle
43	chr8:38886600-38895200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
44	chr8:38886800-38889600	Weak transcription	HUES48 Cell Line	embryonic stem cell
45	chr8:38886800-38890000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
46	chr8:38887000-38889600	Weak transcription	Gastric	stomach
47	chr8:38887000-38890000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
48	chr8:38887000-38895200	Weak transcription	Brain Anterior Caudate	brain
49	chr8:38887200-38889800	Weak transcription	K562	blood
50	chr8:38887200-38895000	Weak transcription	Primary hematopoietic stem cells short term culture	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links