Variant report

Variant	rs7832284
Chromosome Location	chr8:38915604-38915605
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10092021	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10093975	0.82[CHB][hapmap];0.85[JPT][hapmap];0.91[YRI][hapmap]
rs10113077	0.84[CHB][hapmap]
rs10441608	1.00[CHB][hapmap];0.84[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10809000	0.83[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10809001	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11784624	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11985898	0.82[CEU][hapmap];0.85[JPT][hapmap];0.87[EUR][1000 genomes]
rs12156418	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs28434452	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28563781	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28564878	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28579045	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs28690874	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs28868044	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4075849	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4269506	1.00[CEU][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4495395	0.82[CHB][hapmap]
rs4517088	1.00[CEU][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4615534	1.00[CEU][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4733904	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4733971	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs55797573	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56018450	0.82[AMR][1000 genomes]
rs59118660	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs59814883	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6474517	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6474525	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs67200247	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6991383	0.82[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6991968	0.82[CHB][hapmap];0.85[JPT][hapmap]
rs6997721	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7001985	0.83[CHB][hapmap];0.81[JPT][hapmap];0.87[YRI][hapmap]
rs7006535	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7013358	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7015505	0.85[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7464810	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7818363	0.86[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7821437	0.86[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7823125	0.82[CHB][hapmap];0.85[JPT][hapmap]
rs7830975	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7831735	0.88[CHB][hapmap];0.85[JPT][hapmap]
rs7832578	0.82[CHB][hapmap]
rs7834967	0.83[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7835604	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7836422	0.88[CHB][hapmap];0.85[JPT][hapmap];0.86[YRI][hapmap]
rs7838874	0.82[CHB][hapmap]
rs7840044	0.82[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.95[YRI][hapmap];0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7840270	0.85[JPT][hapmap]
rs7844927	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9650347	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3445313	chr8:38886844-38936643	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
2	esv3325011	chr8:38899844-38936643	Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
3	nsv524818	chr8:38912806-38919407	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs7832284	ADAM32	cis	Artery Tibial	GTEx
rs7832284	ADAM32	cis	Thyroid	GTEx
rs7832284	ADAM32	cis	Artery Aorta	GTEx
rs7832284	ADAM32	cis	Nerve Tibial	GTEx
rs7832284	ADAM32	cis	Adipose Subcutaneous	GTEx

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:38890400-38919800	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr8:38896000-38918400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr8:38896000-38925000	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr8:38896200-38916000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr8:38896400-38916400	Weak transcription	K562	blood
6	chr8:38897400-38963400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr8:38897600-38918600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr8:38899800-38916600	Weak transcription	Stomach Smooth Muscle	stomach
9	chr8:38900600-38918400	Weak transcription	Rectal Smooth Muscle	rectum
10	chr8:38900600-38925600	Weak transcription	Small Intestine	intestine
11	chr8:38902400-38916400	Weak transcription	Right Ventricle	heart
12	chr8:38902400-38920000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr8:38902400-38947600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr8:38903000-38921400	Weak transcription	Fetal Heart	heart
15	chr8:38905000-38960000	Weak transcription	HSMMtube	muscle
16	chr8:38906000-38922600	Strong transcription	HSMM	muscle
17	chr8:38906800-38921400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr8:38907600-38916600	Strong transcription	NH-A	brain
19	chr8:38908200-38918400	Weak transcription	Brain Cingulate Gyrus	brain
20	chr8:38908800-38916200	Weak transcription	Fetal Brain Female	brain
21	chr8:38909000-38922800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr8:38910200-38915800	Strong transcription	HepG2	liver
23	chr8:38910200-38922800	Strong transcription	A549	lung
24	chr8:38910600-38916600	Strong transcription	Muscle Satellite Cultured Cells	--
25	chr8:38910800-38920800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr8:38911000-38923600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr8:38911200-38916400	Strong transcription	NHLF	lung
28	chr8:38911200-38918600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr8:38911200-38918800	Strong transcription	NHEK	skin
30	chr8:38911200-38921000	Strong transcription	Placenta	Placenta
31	chr8:38911200-38921200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr8:38911200-38922600	Strong transcription	Dnd41	blood
33	chr8:38911200-38923400	Strong transcription	Osteobl	bone
34	chr8:38911400-38916600	Weak transcription	Brain Germinal Matrix	brain
35	chr8:38911400-38917200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr8:38911400-38917800	Strong transcription	HMEC	breast
37	chr8:38911400-38922000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr8:38911400-38923600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr8:38911600-38916000	Weak transcription	Esophagus	oesophagus
40	chr8:38911600-38916400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr8:38911600-38916600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr8:38911600-38930000	Weak transcription	Pancreas	Pancrea
43	chr8:38911600-38933200	Weak transcription	Colon Smooth Muscle	Colon
44	chr8:38911600-38947800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
45	chr8:38911800-38915800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr8:38911800-38915800	Weak transcription	Aorta	Aorta
47	chr8:38911800-38916000	Weak transcription	Fetal Stomach	stomach
48	chr8:38911800-38916200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr8:38911800-38916200	Weak transcription	Duodenum Smooth Muscle	Duodenum
50	chr8:38911800-38916400	Weak transcription	Fetal Intestine Small	intestine

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