Variant report

Variant	rs10113077
Chromosome Location	chr8:38864382-38864383
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:38853394..38856796-chr8:38860019..38864684,4	MCF-7	breast:
2	chr8:38864002..38868323-chr8:38871441..38875404,3	K562	blood:
3	chr8:38863652..38865668-chr8:38878061..38880403,2	K562	blood:
4	chr8:38862655..38865286-chr8:38875062..38877246,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000168615	Chromatin interaction
ENSG00000207199	Chromatin interaction
ENSG00000169490	Chromatin interaction

Extended variants
information (count: 53 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10086693	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10089487	0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10105311	0.92[ASN][1000 genomes]
rs10106085	0.95[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10441608	0.82[CHB][hapmap]
rs10809000	0.84[CHB][hapmap]
rs10958813	0.80[CEU][hapmap];0.82[CHB][hapmap];0.94[JPT][hapmap];0.84[EUR][1000 genomes]
rs11777376	0.84[EUR][1000 genomes]
rs11784624	0.83[CHB][hapmap]
rs11787126	0.83[CHB][hapmap];0.94[JPT][hapmap]
rs12056655	0.81[CHB][hapmap];0.94[JPT][hapmap];0.84[EUR][1000 genomes]
rs12541231	0.81[CHB][hapmap];0.94[JPT][hapmap]
rs12548006	1.00[JPT][hapmap]
rs12548948	0.83[CHB][hapmap];0.94[JPT][hapmap]
rs12549547	0.83[CHB][hapmap];0.94[JPT][hapmap]
rs13256952	0.81[CHB][hapmap];0.94[JPT][hapmap]
rs13268394	0.81[CHB][hapmap];0.94[JPT][hapmap];0.84[EUR][1000 genomes]
rs13274567	0.83[CHB][hapmap];0.94[JPT][hapmap]
rs13282047	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28641150	0.88[ASN][1000 genomes]
rs34138150	0.81[EUR][1000 genomes]
rs35534138	0.81[EUR][1000 genomes]
rs4075849	0.84[CHB][hapmap]
rs4128871	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4129095	0.81[CHB][hapmap];0.94[JPT][hapmap];0.81[EUR][1000 genomes]
rs4495395	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4543512	0.82[CHB][hapmap];0.94[JPT][hapmap]
rs4733894	0.87[ASN][1000 genomes]
rs4733897	0.88[CHB][hapmap];0.89[JPT][hapmap];0.91[ASN][1000 genomes]
rs4733901	0.81[EUR][1000 genomes]
rs4733905	0.82[JPT][hapmap]
rs4733959	0.82[JPT][hapmap]
rs4733964	0.87[CHB][hapmap];0.88[JPT][hapmap];0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs4733970	0.81[EUR][1000 genomes]
rs6474515	0.88[ASN][1000 genomes]
rs6474516	0.81[CHB][hapmap];0.88[JPT][hapmap];0.88[ASN][1000 genomes]
rs6474525	0.84[CHB][hapmap]
rs6981759	0.85[ASN][1000 genomes]
rs6991383	0.83[CHB][hapmap]
rs7000059	0.87[ASN][1000 genomes]
rs7010131	0.88[ASN][1000 genomes]
rs7015505	0.83[CHB][hapmap]
rs7818363	0.84[CHB][hapmap]
rs7821237	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7821437	0.84[CHB][hapmap]
rs7832284	0.84[CHB][hapmap]
rs7832578	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7834967	0.84[CHB][hapmap]
rs7838874	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7840044	0.83[CHB][hapmap]
rs9643904	0.83[CHB][hapmap];0.94[JPT][hapmap]
rs9643906	0.80[CHB][hapmap];0.94[JPT][hapmap]
rs9650347	0.83[CHB][hapmap]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10113077	TM2D2	cis	Muscle Skeletal	GTEx
rs10113077	PLEKHA2	cis	lesional skin	skin_eQTL

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:38855200-38864600	Weak transcription	Spleen	Spleen
2	chr8:38855800-38881600	Weak transcription	Fetal Kidney	kidney
3	chr8:38856600-38889600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr8:38856800-38865600	Weak transcription	Dnd41	blood
5	chr8:38856800-38866600	Weak transcription	Primary hematopoietic stem cells	blood
6	chr8:38856800-38866600	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr8:38856800-38869400	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr8:38856800-38869400	Weak transcription	Liver	Liver
9	chr8:38856800-38874400	Weak transcription	Brain Anterior Caudate	brain
10	chr8:38856800-38889600	Weak transcription	Colonic Mucosa	Colon
11	chr8:38857200-38881400	Weak transcription	Fetal Brain Female	brain
12	chr8:38857400-38865600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr8:38857400-38872400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr8:38857600-38864400	Weak transcription	Brain Substantia Nigra	brain
15	chr8:38857600-38866400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr8:38857600-38869200	Weak transcription	Brain Angular Gyrus	brain
17	chr8:38857600-38872200	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr8:38857800-38865000	Enhancers	HepG2	liver
19	chr8:38857800-38865600	Weak transcription	Stomach Smooth Muscle	stomach
20	chr8:38857800-38865800	Weak transcription	Fetal Intestine Large	intestine
21	chr8:38858000-38874200	Weak transcription	Fetal Brain Male	brain
22	chr8:38858000-38874400	Weak transcription	Brain Cingulate Gyrus	brain
23	chr8:38858200-38864600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
24	chr8:38858200-38864600	Weak transcription	Left Ventricle	heart
25	chr8:38858200-38867400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr8:38858200-38867800	Weak transcription	Sigmoid Colon	Sigmoid Colon
27	chr8:38858200-38875200	Weak transcription	Esophagus	oesophagus
28	chr8:38859000-38864800	Weak transcription	Rectal Mucosa Donor 31	rectum
29	chr8:38859000-38865600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr8:38859000-38866600	Weak transcription	Rectal Mucosa Donor 29	rectum
31	chr8:38860200-38864800	Enhancers	Cortex derived primary cultured neurospheres	brain
32	chr8:38860600-38864600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr8:38860600-38864600	Weak transcription	Primary B cells from peripheral blood	blood
34	chr8:38860600-38869400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr8:38860600-38875000	Weak transcription	Gastric	stomach
36	chr8:38860800-38865000	Enhancers	Fetal Heart	heart
37	chr8:38861000-38864600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr8:38861000-38864800	Weak transcription	Primary B cells from cord blood	blood
39	chr8:38861600-38864400	Enhancers	NHLF	lung
40	chr8:38861800-38865400	Enhancers	Fetal Lung	lung
41	chr8:38862000-38865200	Enhancers	HUVEC	blood vessel
42	chr8:38862200-38864600	Weak transcription	Right Atrium	heart
43	chr8:38862200-38865600	Weak transcription	Fetal Muscle Trunk	muscle
44	chr8:38862400-38864600	Weak transcription	Right Ventricle	heart
45	chr8:38862400-38866600	Weak transcription	Lung	lung
46	chr8:38862400-38871000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
47	chr8:38862600-38864600	Weak transcription	Fetal Muscle Leg	muscle
48	chr8:38862600-38884400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
49	chr8:38862800-38864400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
50	chr8:38862800-38864400	Weak transcription	Placenta	Placenta

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