Variant report

Variant	rs7821237
Chromosome Location	chr8:38861838-38861839
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:38853394..38856796-chr8:38860019..38864684,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000168615	Chromatin interaction
ENSG00000169490	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10086693	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10089487	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10105311	0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10106085	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10113077	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10958813	0.81[EUR][1000 genomes]
rs11777376	0.81[EUR][1000 genomes]
rs12056655	0.81[EUR][1000 genomes]
rs13268394	0.81[EUR][1000 genomes]
rs13282047	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28641150	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs4128871	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4495395	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4733894	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs4733897	0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs4733964	0.89[ASN][1000 genomes]
rs6474515	0.88[ASN][1000 genomes]
rs6474516	0.80[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs6981759	0.85[ASN][1000 genomes]
rs7000059	0.87[ASN][1000 genomes]
rs7010131	0.88[ASN][1000 genomes]
rs7832578	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7838874	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7821237	TM2D2	cis	Muscle Skeletal	GTEx

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:38855200-38864600	Weak transcription	Spleen	Spleen
2	chr8:38855800-38881600	Weak transcription	Fetal Kidney	kidney
3	chr8:38856600-38889600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr8:38856800-38862000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr8:38856800-38862200	Weak transcription	Aorta	Aorta
6	chr8:38856800-38862400	Weak transcription	Brain Hippocampus Middle	brain
7	chr8:38856800-38865600	Weak transcription	Dnd41	blood
8	chr8:38856800-38866600	Weak transcription	Primary hematopoietic stem cells	blood
9	chr8:38856800-38866600	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr8:38856800-38869400	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr8:38856800-38869400	Weak transcription	Liver	Liver
12	chr8:38856800-38874400	Weak transcription	Brain Anterior Caudate	brain
13	chr8:38856800-38889600	Weak transcription	Colonic Mucosa	Colon
14	chr8:38857200-38881400	Weak transcription	Fetal Brain Female	brain
15	chr8:38857400-38865600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr8:38857400-38872400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
17	chr8:38857600-38862000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr8:38857600-38864400	Weak transcription	Brain Substantia Nigra	brain
19	chr8:38857600-38866400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr8:38857600-38869200	Weak transcription	Brain Angular Gyrus	brain
21	chr8:38857600-38872200	Weak transcription	Pancreatic Islets	Pancreatic Islet
22	chr8:38857800-38862200	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr8:38857800-38865000	Enhancers	HepG2	liver
24	chr8:38857800-38865600	Weak transcription	Stomach Smooth Muscle	stomach
25	chr8:38857800-38865800	Weak transcription	Fetal Intestine Large	intestine
26	chr8:38858000-38862200	Weak transcription	Fetal Stomach	stomach
27	chr8:38858000-38874200	Weak transcription	Fetal Brain Male	brain
28	chr8:38858000-38874400	Weak transcription	Brain Cingulate Gyrus	brain
29	chr8:38858200-38864600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
30	chr8:38858200-38864600	Weak transcription	Left Ventricle	heart
31	chr8:38858200-38867400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr8:38858200-38867800	Weak transcription	Sigmoid Colon	Sigmoid Colon
33	chr8:38858200-38875200	Weak transcription	Esophagus	oesophagus
34	chr8:38858600-38862200	Weak transcription	Skeletal Muscle Female	skeletal muscle
35	chr8:38858800-38862200	Weak transcription	HSMMtube	muscle
36	chr8:38858800-38863600	Enhancers	NH-A	brain
37	chr8:38859000-38864800	Weak transcription	Rectal Mucosa Donor 31	rectum
38	chr8:38859000-38865600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr8:38859000-38866600	Weak transcription	Rectal Mucosa Donor 29	rectum
40	chr8:38859200-38862200	Weak transcription	Duodenum Smooth Muscle	Duodenum
41	chr8:38859200-38862400	Weak transcription	Duodenum Mucosa	Duodenum
42	chr8:38860000-38864000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr8:38860200-38862000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr8:38860200-38862000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr8:38860200-38862000	Flanking Active TSS	HUVEC	blood vessel
46	chr8:38860200-38863600	Enhancers	NHDF-Ad	bronchial
47	chr8:38860200-38864800	Enhancers	Cortex derived primary cultured neurospheres	brain
48	chr8:38860400-38862200	Genic enhancers	Muscle Satellite Cultured Cells	--
49	chr8:38860400-38862600	Enhancers	HMEC	breast
50	chr8:38860400-38863200	Enhancers	HSMM	muscle

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