Variant report

Variant	rs4733964
Chromosome Location	chr8:38847959-38847960
allele	A/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:38841357..38843525-chr8:38845829..38848032,2	K562	blood:
2	chr8:38842260..38845059-chr8:38847931..38850445,2	MCF-7	breast:
3	chr8:38847757..38848257-chrX:72783227..72783730,2	NB4	blood:
4	chr8:38829292..38831588-chr8:38847607..38850439,2	K562	blood:

Variant related genes	Relation type
ENSG00000204116	Chromatin interaction
ENSG00000253645	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 7 )

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10089487	0.80[CHB][hapmap];0.89[CHD][hapmap];0.88[JPT][hapmap];0.82[TSI][hapmap];0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs10093975	0.84[CHD][hapmap]
rs10105311	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10106085	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs10113077	0.87[CHB][hapmap];0.88[JPT][hapmap];0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs10958813	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs11787126	0.81[JPT][hapmap]
rs12056655	0.81[JPT][hapmap]
rs12541231	0.81[JPT][hapmap]
rs12548006	0.88[JPT][hapmap]
rs12548948	0.81[JPT][hapmap]
rs12549547	0.81[JPT][hapmap]
rs13256952	0.81[JPT][hapmap]
rs13268394	0.81[JPT][hapmap]
rs13274567	0.81[JPT][hapmap]
rs13282047	0.89[ASN][1000 genomes]
rs28641150	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4128871	0.87[ASN][1000 genomes]
rs4129095	0.81[JPT][hapmap]
rs4495395	0.87[CHB][hapmap];0.86[CHD][hapmap];0.88[JPT][hapmap];0.82[TSI][hapmap]
rs4543512	0.81[JPT][hapmap]
rs4733894	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4733897	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4733959	0.82[CHB][hapmap];0.91[GIH][hapmap];0.94[JPT][hapmap];0.84[TSI][hapmap];0.83[EUR][1000 genomes]
rs6474515	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6474516	0.82[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6981759	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6985572	0.85[CHD][hapmap];0.88[JPT][hapmap];0.82[MEX][hapmap];0.81[TSI][hapmap];0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6996274	0.81[ASN][1000 genomes]
rs7000059	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7010131	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7295	0.84[CEU][hapmap];0.85[CHD][hapmap];0.81[JPT][hapmap];0.82[MEX][hapmap];0.88[TSI][hapmap];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7821237	0.89[ASN][1000 genomes]
rs7823125	0.83[MEX][hapmap]
rs7831735	0.82[CHB][hapmap];0.84[CHD][hapmap]
rs7832578	0.87[CHB][hapmap];0.86[CHD][hapmap];0.88[JPT][hapmap];0.82[MEX][hapmap];0.82[ASN][1000 genomes]
rs7836422	0.82[CHB][hapmap];0.83[CHD][hapmap]
rs7838874	0.87[CHB][hapmap];0.93[CHD][hapmap];0.88[JPT][hapmap];0.82[TSI][hapmap];0.89[ASN][1000 genomes]
rs7840270	0.81[CHD][hapmap]
rs9643904	0.81[JPT][hapmap]
rs9643906	0.86[JPT][hapmap]
rs9987126	0.86[CHB][hapmap];0.85[CHD][hapmap];0.81[JPT][hapmap];0.82[MEX][hapmap];0.84[TSI][hapmap];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]

mRNA abundance (count:7)

SNP	Gene	Cis/trans	Tissue	Source
rs4733964	ADAM32	cis	cerebellum	SCAN
rs4733964	PLEKHA2	cis	lymphoblastoid	seeQTL
rs4733964	ADAM32	cis	parietal	SCAN
rs4733964	TM2D2	cis	Muscle Skeletal	GTEx
rs4733964	TM2D2	cis	parietal	SCAN
rs4733964	DDHD2	cis	cerebellum	SCAN
rs4733964	TM2D2	cis	cerebellum	SCAN

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:38824200-38848400	Weak transcription	Brain Angular Gyrus	brain
2	chr8:38824200-38848800	Weak transcription	Brain Cingulate Gyrus	brain
3	chr8:38828000-38848000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr8:38828400-38848200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr8:38828800-38848400	Weak transcription	HSMMtube	muscle
6	chr8:38829000-38848400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
7	chr8:38831600-38848200	Weak transcription	Colon Smooth Muscle	Colon
8	chr8:38831800-38848400	Weak transcription	Stomach Smooth Muscle	stomach
9	chr8:38832000-38848000	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr8:38832000-38848200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
11	chr8:38832000-38848600	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr8:38832200-38848400	Weak transcription	Ovary	ovary
13	chr8:38832400-38848000	Weak transcription	Adipose Nuclei	Adipose
14	chr8:38832400-38848400	Weak transcription	Right Ventricle	heart
15	chr8:38832400-38848800	Weak transcription	Pancreas	Pancrea
16	chr8:38832600-38848600	Weak transcription	Esophagus	oesophagus
17	chr8:38832600-38848800	Weak transcription	Gastric	stomach
18	chr8:38832600-38848800	Weak transcription	Rectal Smooth Muscle	rectum
19	chr8:38832600-38853000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr8:38835800-38848800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr8:38836400-38848400	Weak transcription	Spleen	Spleen
22	chr8:38840400-38848200	Weak transcription	HSMM	muscle
23	chr8:38840600-38848200	Weak transcription	HepG2	liver
24	chr8:38840600-38848400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr8:38840600-38848600	Weak transcription	Placenta Amnion	Placenta Amnion
26	chr8:38840800-38848000	Weak transcription	K562	blood
27	chr8:38843600-38848000	Weak transcription	H1 Cell Line	embryonic stem cell
28	chr8:38844000-38848400	Weak transcription	Psoas Muscle	Psoas
29	chr8:38844200-38848200	Weak transcription	Brain Germinal Matrix	brain
30	chr8:38844600-38848200	Weak transcription	NHDF-Ad	bronchial
31	chr8:38844600-38848400	Weak transcription	Skeletal Muscle Male	skeletal muscle
32	chr8:38844600-38848600	Weak transcription	Fetal Intestine Small	intestine
33	chr8:38844800-38848000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
34	chr8:38844800-38848200	Weak transcription	NHEK	skin
35	chr8:38845000-38848000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr8:38845000-38848600	Weak transcription	Colonic Mucosa	Colon
37	chr8:38845200-38848400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
38	chr8:38845200-38851600	Strong transcription	Primary B cells from peripheral blood	blood
39	chr8:38845400-38852000	Strong transcription	Osteobl	bone
40	chr8:38845600-38851600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr8:38845800-38851400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
42	chr8:38845800-38851800	Strong transcription	Fetal Muscle Leg	muscle
43	chr8:38846000-38851200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr8:38846000-38852400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
45	chr8:38846200-38851400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr8:38846200-38851400	Strong transcription	Primary monocytes fromperipheralblood	blood
47	chr8:38846200-38851400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr8:38846400-38849800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
49	chr8:38846400-38850400	Strong transcription	Dnd41	blood
50	chr8:38846400-38850600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood

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