Variant report

Variant	rs10958813
Chromosome Location	chr8:38873945-38873946
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:38853928..38855583-chr8:38872640..38874689,2	K562	blood:

Variant related genes	Relation type
ENSG00000168615	Chromatin interaction
ENSG00000169490	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10086693	0.81[EUR][1000 genomes]
rs10089487	0.94[JPT][hapmap];0.83[EUR][1000 genomes]
rs10106085	0.82[CEU][hapmap];0.83[EUR][1000 genomes]
rs10113077	0.80[CEU][hapmap];0.82[CHB][hapmap];0.94[JPT][hapmap];0.84[EUR][1000 genomes]
rs11777149	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11777376	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11787126	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12056655	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12541231	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12543921	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12546318	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12548006	0.87[CEU][hapmap];0.86[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12548948	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12549547	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13248324	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13256952	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13268394	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13274567	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13282047	0.84[EUR][1000 genomes]
rs34138150	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34185462	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35391544	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35534138	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4128871	0.81[EUR][1000 genomes]
rs4129095	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4495395	0.81[CHB][hapmap];0.94[JPT][hapmap];0.83[EUR][1000 genomes]
rs4543512	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4733897	0.87[CHB][hapmap];0.81[JPT][hapmap]
rs4733901	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4733905	0.95[CEU][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4733964	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs4733970	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6474516	0.81[CHB][hapmap];0.81[JPT][hapmap]
rs66925354	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7821237	0.81[EUR][1000 genomes]
rs7832578	0.80[CHB][hapmap];0.94[JPT][hapmap];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7838874	0.94[JPT][hapmap];0.84[EUR][1000 genomes]
rs9643858	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9643902	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9643904	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9643906	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:38855800-38881600	Weak transcription	Fetal Kidney	kidney
2	chr8:38856600-38889600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr8:38856800-38874400	Weak transcription	Brain Anterior Caudate	brain
4	chr8:38856800-38889600	Weak transcription	Colonic Mucosa	Colon
5	chr8:38857200-38881400	Weak transcription	Fetal Brain Female	brain
6	chr8:38858000-38874200	Weak transcription	Fetal Brain Male	brain
7	chr8:38858000-38874400	Weak transcription	Brain Cingulate Gyrus	brain
8	chr8:38858200-38875200	Weak transcription	Esophagus	oesophagus
9	chr8:38860600-38875000	Weak transcription	Gastric	stomach
10	chr8:38862600-38884400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr8:38862800-38878200	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr8:38863400-38883200	Weak transcription	Brain Germinal Matrix	brain
13	chr8:38863600-38881000	Weak transcription	Small Intestine	intestine
14	chr8:38865000-38874400	Weak transcription	Left Ventricle	heart
15	chr8:38865000-38880600	Weak transcription	Brain Substantia Nigra	brain
16	chr8:38865000-38881400	Weak transcription	Spleen	Spleen
17	chr8:38865000-38887200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr8:38865000-38889600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr8:38865200-38874200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr8:38865200-38877800	Strong transcription	Cortex derived primary cultured neurospheres	brain
21	chr8:38865200-38887400	Strong transcription	HUES64 Cell Line	embryonic stem cell
22	chr8:38865400-38874400	Strong transcription	Monocytes-CD14+_RO01746	blood
23	chr8:38865400-38877200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
24	chr8:38865400-38886000	Strong transcription	Primary neutrophils fromperipheralblood	blood
25	chr8:38865400-38887800	Strong transcription	HSMM	muscle
26	chr8:38865400-38888800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr8:38865600-38888200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr8:38865600-38889000	Strong transcription	Primary monocytes fromperipheralblood	blood
29	chr8:38866000-38888400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr8:38867000-38880400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr8:38867200-38874200	Weak transcription	Rectal Mucosa Donor 31	rectum
32	chr8:38867200-38875200	Weak transcription	Rectal Mucosa Donor 29	rectum
33	chr8:38868200-38874200	Weak transcription	K562	blood
34	chr8:38868200-38881200	Weak transcription	Rectal Smooth Muscle	rectum
35	chr8:38869000-38877600	Strong transcription	HUES6 Cell Line	embryonic stem cell
36	chr8:38869600-38902800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr8:38869800-38874200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
38	chr8:38869800-38874400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr8:38869800-38874400	Weak transcription	Brain Hippocampus Middle	brain
40	chr8:38869800-38874400	Weak transcription	Sigmoid Colon	Sigmoid Colon
41	chr8:38869800-38875000	Weak transcription	Fetal Intestine Small	intestine
42	chr8:38869800-38877400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr8:38869800-38880200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr8:38869800-38880200	Weak transcription	Lung	lung
45	chr8:38869800-38881400	Weak transcription	Right Ventricle	heart
46	chr8:38869800-38883200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
47	chr8:38869800-38885200	Weak transcription	Aorta	Aorta
48	chr8:38869800-38888400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr8:38870000-38874200	Weak transcription	Fetal Muscle Leg	muscle
50	chr8:38870000-38874400	Weak transcription	Brain Angular Gyrus	brain

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