Variant report

Variant	rs11777376
Chromosome Location	chr8:38868503-38868504
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:38852888..38856503-chr8:38866634..38870825,5	K562	blood:
2	chr8:38853632..38856492-chr8:38868146..38870825,2	K562	blood:

Variant related genes	Relation type
ENSG00000168615	Chromatin interaction
ENSG00000169490	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10086693	0.81[EUR][1000 genomes]
rs10089487	0.83[EUR][1000 genomes]
rs10106085	0.83[EUR][1000 genomes]
rs10113077	0.84[EUR][1000 genomes]
rs10958813	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11777149	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11787126	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12056655	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12541231	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12543921	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12546318	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12548006	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12548948	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12549547	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13248324	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13256952	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13268394	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13274567	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13282047	0.84[EUR][1000 genomes]
rs34138150	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34185462	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35391544	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35534138	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4128871	0.81[EUR][1000 genomes]
rs4129095	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4495395	0.83[EUR][1000 genomes]
rs4543512	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4733901	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4733905	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4733970	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs66925354	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7821237	0.81[EUR][1000 genomes]
rs7832578	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7838874	0.84[EUR][1000 genomes]
rs9643858	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9643902	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9643904	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9643906	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:38855800-38881600	Weak transcription	Fetal Kidney	kidney
2	chr8:38856600-38889600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr8:38856800-38869400	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr8:38856800-38869400	Weak transcription	Liver	Liver
5	chr8:38856800-38874400	Weak transcription	Brain Anterior Caudate	brain
6	chr8:38856800-38889600	Weak transcription	Colonic Mucosa	Colon
7	chr8:38857200-38881400	Weak transcription	Fetal Brain Female	brain
8	chr8:38857400-38872400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr8:38857600-38869200	Weak transcription	Brain Angular Gyrus	brain
10	chr8:38857600-38872200	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr8:38858000-38874200	Weak transcription	Fetal Brain Male	brain
12	chr8:38858000-38874400	Weak transcription	Brain Cingulate Gyrus	brain
13	chr8:38858200-38875200	Weak transcription	Esophagus	oesophagus
14	chr8:38860600-38869400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr8:38860600-38875000	Weak transcription	Gastric	stomach
16	chr8:38862400-38871000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr8:38862600-38884400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr8:38862800-38869400	Weak transcription	Duodenum Mucosa	Duodenum
19	chr8:38862800-38869400	Weak transcription	Pancreas	Pancrea
20	chr8:38862800-38873200	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr8:38862800-38878200	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr8:38863200-38869200	Weak transcription	Aorta	Aorta
23	chr8:38863200-38869200	Weak transcription	Brain Hippocampus Middle	brain
24	chr8:38863400-38869200	Weak transcription	Adipose Nuclei	Adipose
25	chr8:38863400-38883200	Weak transcription	Brain Germinal Matrix	brain
26	chr8:38863600-38881000	Weak transcription	Small Intestine	intestine
27	chr8:38864800-38868600	Weak transcription	Placenta	Placenta
28	chr8:38864800-38870200	Strong transcription	NHEK	skin
29	chr8:38865000-38869200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
30	chr8:38865000-38869200	Weak transcription	Primary B cells from peripheral blood	blood
31	chr8:38865000-38869200	Weak transcription	Psoas Muscle	Psoas
32	chr8:38865000-38869400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr8:38865000-38871400	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr8:38865000-38871800	Strong transcription	Osteobl	bone
35	chr8:38865000-38872000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr8:38865000-38872000	Weak transcription	Stomach Mucosa	stomach
37	chr8:38865000-38873000	Weak transcription	Fetal Heart	heart
38	chr8:38865000-38874400	Weak transcription	Left Ventricle	heart
39	chr8:38865000-38880600	Weak transcription	Brain Substantia Nigra	brain
40	chr8:38865000-38881400	Weak transcription	Spleen	Spleen
41	chr8:38865000-38887200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
42	chr8:38865000-38889600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
43	chr8:38865200-38868800	Weak transcription	Primary B cells from cord blood	blood
44	chr8:38865200-38872400	Strong transcription	NHDF-Ad	bronchial
45	chr8:38865200-38874200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr8:38865200-38877800	Strong transcription	Cortex derived primary cultured neurospheres	brain
47	chr8:38865200-38887400	Strong transcription	HUES64 Cell Line	embryonic stem cell
48	chr8:38865400-38869400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr8:38865400-38870800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr8:38865400-38872000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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