Variant report

Variant	rs4733901
Chromosome Location	chr8:38877792-38877793
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10086693	0.80[EUR][1000 genomes]
rs10113077	0.81[EUR][1000 genomes]
rs10958813	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11777149	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11777376	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11787126	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12056655	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12541231	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12543921	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12546318	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12548006	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12548948	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12549547	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13248324	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13256952	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13268394	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13274567	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13282047	0.81[EUR][1000 genomes]
rs34138150	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34185462	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35391544	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35534138	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4129095	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4495395	0.81[EUR][1000 genomes]
rs4543512	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4733905	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4733970	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs66925354	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7832578	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7838874	0.81[EUR][1000 genomes]
rs9643858	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9643902	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9643904	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9643906	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:38855800-38881600	Weak transcription	Fetal Kidney	kidney
2	chr8:38856600-38889600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr8:38856800-38889600	Weak transcription	Colonic Mucosa	Colon
4	chr8:38857200-38881400	Weak transcription	Fetal Brain Female	brain
5	chr8:38862600-38884400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr8:38862800-38878200	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr8:38863400-38883200	Weak transcription	Brain Germinal Matrix	brain
8	chr8:38863600-38881000	Weak transcription	Small Intestine	intestine
9	chr8:38865000-38880600	Weak transcription	Brain Substantia Nigra	brain
10	chr8:38865000-38881400	Weak transcription	Spleen	Spleen
11	chr8:38865000-38887200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr8:38865000-38889600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr8:38865200-38877800	Strong transcription	Cortex derived primary cultured neurospheres	brain
14	chr8:38865200-38887400	Strong transcription	HUES64 Cell Line	embryonic stem cell
15	chr8:38865400-38886000	Strong transcription	Primary neutrophils fromperipheralblood	blood
16	chr8:38865400-38887800	Strong transcription	HSMM	muscle
17	chr8:38865400-38888800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr8:38865600-38888200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr8:38865600-38889000	Strong transcription	Primary monocytes fromperipheralblood	blood
20	chr8:38866000-38888400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr8:38867000-38880400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr8:38868200-38881200	Weak transcription	Rectal Smooth Muscle	rectum
23	chr8:38869600-38902800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr8:38869800-38880200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr8:38869800-38880200	Weak transcription	Lung	lung
26	chr8:38869800-38881400	Weak transcription	Right Ventricle	heart
27	chr8:38869800-38883200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
28	chr8:38869800-38885200	Weak transcription	Aorta	Aorta
29	chr8:38869800-38888400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr8:38870000-38879200	Weak transcription	Liver	Liver
31	chr8:38870000-38881200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
32	chr8:38870000-38881800	Weak transcription	Brain Inferior Temporal Lobe	brain
33	chr8:38870000-38886400	Weak transcription	Pancreas	Pancrea
34	chr8:38872000-38886200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr8:38872000-38890400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
36	chr8:38872200-38877800	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr8:38872400-38881400	Strong transcription	HMEC	breast
38	chr8:38872400-38888200	Strong transcription	Fetal Intestine Large	intestine
39	chr8:38872600-38889600	Weak transcription	Pancreatic Islets	Pancreatic Islet
40	chr8:38872600-38889800	Weak transcription	Primary B cells from peripheral blood	blood
41	chr8:38872800-38888000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr8:38873200-38883800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr8:38873400-38883800	Strong transcription	NHDF-Ad	bronchial
44	chr8:38873600-38879200	Weak transcription	Skeletal Muscle Male	skeletal muscle
45	chr8:38873600-38881000	Weak transcription	Ovary	ovary
46	chr8:38874200-38877800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
47	chr8:38874200-38886400	Strong transcription	Fetal Muscle Trunk	muscle
48	chr8:38874400-38888800	Strong transcription	Hela-S3	cervix
49	chr8:38875000-38879200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr8:38875000-38883400	Strong transcription	NH-A	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links