Variant report

Variant	rs34138150
Chromosome Location	chr8:38899772-38899773
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:38898390..38901319-chr8:38947288..38950284,2	K562	blood:

Variant related genes	Relation type
ENSG00000168615	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10086693	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10113077	0.81[EUR][1000 genomes]
rs10958813	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11777149	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11777376	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11787126	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12056655	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12541231	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12543921	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12546318	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12548006	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12548948	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12549547	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13248324	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13256952	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13268394	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13274567	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs13282047	0.81[EUR][1000 genomes]
rs34185462	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35391544	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35534138	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4129095	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4495395	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4543512	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4733901	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4733905	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4733970	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66925354	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7832578	0.83[EUR][1000 genomes]
rs7838874	0.81[EUR][1000 genomes]
rs9643858	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9643902	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9643904	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9643906	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3445313	chr8:38886844-38936643	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:38869600-38902800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr8:38882000-38913600	Weak transcription	Fetal Kidney	kidney
3	chr8:38883000-38913000	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr8:38885200-38902800	Weak transcription	Psoas Muscle	Psoas
5	chr8:38885400-38904400	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr8:38885600-38903600	Weak transcription	Fetal Brain Female	brain
7	chr8:38885800-38911200	Weak transcription	Ovary	ovary
8	chr8:38886400-38904400	Weak transcription	Fetal Muscle Trunk	muscle
9	chr8:38887400-38911200	Weak transcription	Aorta	Aorta
10	chr8:38888200-38904400	Weak transcription	GM12878-XiMat	blood
11	chr8:38888400-38905400	Weak transcription	Primary B cells from cord blood	blood
12	chr8:38888800-38901600	Weak transcription	Fetal Brain Male	brain
13	chr8:38890000-38904400	Weak transcription	Gastric	stomach
14	chr8:38890200-38904400	Weak transcription	Esophagus	oesophagus
15	chr8:38890200-38911200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr8:38890200-38914400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr8:38890400-38903400	Weak transcription	Fetal Muscle Leg	muscle
18	chr8:38890400-38904200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr8:38890400-38904200	Weak transcription	Fetal Intestine Small	intestine
20	chr8:38890400-38904200	Weak transcription	Lung	lung
21	chr8:38890400-38919800	Weak transcription	H1 Cell Line	embryonic stem cell
22	chr8:38892600-38901000	Weak transcription	Dnd41	blood
23	chr8:38895600-38902000	Weak transcription	Right Ventricle	heart
24	chr8:38895600-38911200	Weak transcription	Fetal Stomach	stomach
25	chr8:38895800-38901600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
26	chr8:38896000-38901600	Weak transcription	HUES6 Cell Line	embryonic stem cell
27	chr8:38896000-38918400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
28	chr8:38896000-38925000	Weak transcription	H9 Cell Line	embryonic stem cell
29	chr8:38896200-38899800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr8:38896200-38900600	Weak transcription	Primary neutrophils fromperipheralblood	blood
31	chr8:38896200-38900800	Genic enhancers	HSMM	muscle
32	chr8:38896200-38901800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
33	chr8:38896200-38907600	Weak transcription	Duodenum Mucosa	Duodenum
34	chr8:38896200-38911200	Weak transcription	Placenta	Placenta
35	chr8:38896200-38911200	Weak transcription	Left Ventricle	heart
36	chr8:38896200-38916000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr8:38896400-38900200	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr8:38896400-38916400	Weak transcription	K562	blood
39	chr8:38896600-38905200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
40	chr8:38896600-38912800	Weak transcription	Skeletal Muscle Female	skeletal muscle
41	chr8:38896800-38900200	Enhancers	Osteobl	bone
42	chr8:38896800-38900400	Weak transcription	Small Intestine	intestine
43	chr8:38896800-38904000	Weak transcription	Primary hematopoietic stem cells	blood
44	chr8:38896800-38911200	Weak transcription	Adipose Nuclei	Adipose
45	chr8:38897200-38900200	Weak transcription	Pancreatic Islets	Pancreatic Islet
46	chr8:38897200-38907000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
47	chr8:38897200-38907800	Weak transcription	Brain Cingulate Gyrus	brain
48	chr8:38897200-38911200	Weak transcription	Sigmoid Colon	Sigmoid Colon
49	chr8:38897400-38900000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr8:38897400-38900200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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