Variant report

Variant	rs9643902
Chromosome Location	chr8:38910416-38910417
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10958813	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11777149	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11777376	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11787126	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12056655	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12541231	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12543388	0.82[EUR][1000 genomes]
rs12543921	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12546318	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12548006	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12548416	0.82[EUR][1000 genomes]
rs12548948	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12549547	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13248324	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13256952	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13268394	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13274567	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34070223	0.82[EUR][1000 genomes]
rs34138150	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34185462	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs35391544	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35534138	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4129095	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4543512	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4733901	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4733905	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4733970	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs66925354	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9643858	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9643904	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9643906	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3445313	chr8:38886844-38936643	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
2	esv3325011	chr8:38899844-38936643	Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:38882000-38913600	Weak transcription	Fetal Kidney	kidney
2	chr8:38883000-38913000	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr8:38885800-38911200	Weak transcription	Ovary	ovary
4	chr8:38887400-38911200	Weak transcription	Aorta	Aorta
5	chr8:38890200-38911200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr8:38890200-38914400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr8:38890400-38919800	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr8:38895600-38911200	Weak transcription	Fetal Stomach	stomach
9	chr8:38896000-38918400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr8:38896000-38925000	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr8:38896200-38911200	Weak transcription	Placenta	Placenta
12	chr8:38896200-38911200	Weak transcription	Left Ventricle	heart
13	chr8:38896200-38916000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr8:38896400-38916400	Weak transcription	K562	blood
15	chr8:38896600-38912800	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr8:38896800-38911200	Weak transcription	Adipose Nuclei	Adipose
17	chr8:38897200-38911200	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr8:38897400-38963400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
19	chr8:38897600-38918600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
20	chr8:38899800-38911400	Weak transcription	Brain Angular Gyrus	brain
21	chr8:38899800-38916600	Weak transcription	Stomach Smooth Muscle	stomach
22	chr8:38900000-38911200	Weak transcription	Rectal Mucosa Donor 31	rectum
23	chr8:38900000-38911400	Weak transcription	Brain Substantia Nigra	brain
24	chr8:38900200-38911200	Strong transcription	Monocytes-CD14+_RO01746	blood
25	chr8:38900400-38911400	Weak transcription	HMEC	breast
26	chr8:38900600-38912800	Weak transcription	HUES48 Cell Line	embryonic stem cell
27	chr8:38900600-38918400	Weak transcription	Rectal Smooth Muscle	rectum
28	chr8:38900600-38925600	Weak transcription	Small Intestine	intestine
29	chr8:38900800-38912000	Weak transcription	Hela-S3	cervix
30	chr8:38901000-38911400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr8:38901600-38911200	Weak transcription	NHEK	skin
32	chr8:38902200-38911400	Weak transcription	Colon Smooth Muscle	Colon
33	chr8:38902400-38911000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr8:38902400-38916400	Weak transcription	Right Ventricle	heart
35	chr8:38902400-38920000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
36	chr8:38902400-38947600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr8:38902600-38911200	Weak transcription	HUES6 Cell Line	embryonic stem cell
38	chr8:38903000-38911200	Weak transcription	Dnd41	blood
39	chr8:38903000-38921400	Weak transcription	Fetal Heart	heart
40	chr8:38904400-38911200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr8:38904600-38911200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr8:38904600-38911200	Weak transcription	Gastric	stomach
43	chr8:38904600-38911200	Weak transcription	Spleen	Spleen
44	chr8:38904600-38911400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr8:38904600-38911400	Weak transcription	Esophagus	oesophagus
46	chr8:38904600-38911400	Weak transcription	Pancreas	Pancrea
47	chr8:38904600-38913200	Weak transcription	Placenta Amnion	Placenta Amnion
48	chr8:38904600-38915200	Weak transcription	Lung	lung
49	chr8:38905000-38911400	Weak transcription	Brain Inferior Temporal Lobe	brain
50	chr8:38905000-38913800	Weak transcription	Fetal Brain Male	brain

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