Variant report

Variant	rs35534138
Chromosome Location	chr8:38894334-38894335
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:38853640..38855398-chr8:38893873..38896745,2	MCF-7	breast:
2	chr8:38853505..38856171-chr8:38893000..38895883,3	K562	blood:

Variant related genes	Relation type
ENSG00000169490	Chromatin interaction
ENSG00000168615	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10086693	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10113077	0.81[EUR][1000 genomes]
rs10958813	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11777149	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11777376	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11787126	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12056655	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12541231	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12543921	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12546318	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12548006	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12548948	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12549547	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13248324	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13256952	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13268394	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13274567	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs13282047	0.81[EUR][1000 genomes]
rs34138150	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34185462	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35391544	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4129095	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4495395	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4543512	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4733901	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4733905	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4733970	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66925354	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7832578	0.83[EUR][1000 genomes]
rs7838874	0.81[EUR][1000 genomes]
rs9643858	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9643902	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9643904	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9643906	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3445313	chr8:38886844-38936643	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
2	esv3435007	chr8:38894325-38894790	Weak transcription Genic enhancers Enhancers Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:38869600-38902800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr8:38875800-38895400	Weak transcription	Brain Angular Gyrus	brain
3	chr8:38882000-38913600	Weak transcription	Fetal Kidney	kidney
4	chr8:38882800-38895000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr8:38882800-38895000	Weak transcription	Rectal Smooth Muscle	rectum
6	chr8:38883000-38895000	Weak transcription	Spleen	Spleen
7	chr8:38883000-38913000	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr8:38885000-38895400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr8:38885000-38895400	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr8:38885000-38896400	Weak transcription	Brain Cingulate Gyrus	brain
11	chr8:38885000-38899400	Weak transcription	Liver	Liver
12	chr8:38885200-38895200	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr8:38885200-38895400	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr8:38885200-38902800	Weak transcription	Psoas Muscle	Psoas
15	chr8:38885400-38904400	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr8:38885600-38903600	Weak transcription	Fetal Brain Female	brain
17	chr8:38885800-38895200	Weak transcription	Stomach Smooth Muscle	stomach
18	chr8:38885800-38911200	Weak transcription	Ovary	ovary
19	chr8:38886000-38899400	Weak transcription	Brain Substantia Nigra	brain
20	chr8:38886400-38895000	Weak transcription	Adipose Nuclei	Adipose
21	chr8:38886400-38895000	Weak transcription	Small Intestine	intestine
22	chr8:38886400-38895200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr8:38886400-38904400	Weak transcription	Fetal Muscle Trunk	muscle
24	chr8:38886600-38895200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
25	chr8:38887000-38895200	Weak transcription	Brain Anterior Caudate	brain
26	chr8:38887200-38895000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
27	chr8:38887400-38895200	Weak transcription	Colon Smooth Muscle	Colon
28	chr8:38887400-38911200	Weak transcription	Aorta	Aorta
29	chr8:38887800-38895400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr8:38887800-38895400	Weak transcription	Brain Hippocampus Middle	brain
31	chr8:38888000-38895000	Weak transcription	Placenta	Placenta
32	chr8:38888000-38895400	Weak transcription	Duodenum Mucosa	Duodenum
33	chr8:38888000-38895600	Weak transcription	Primary hematopoietic stem cells	blood
34	chr8:38888000-38899600	Weak transcription	Duodenum Smooth Muscle	Duodenum
35	chr8:38888200-38895200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr8:38888200-38897000	Weak transcription	Fetal Intestine Large	intestine
37	chr8:38888200-38904400	Weak transcription	GM12878-XiMat	blood
38	chr8:38888400-38895400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr8:38888400-38895800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr8:38888400-38905400	Weak transcription	Primary B cells from cord blood	blood
41	chr8:38888800-38901600	Weak transcription	Fetal Brain Male	brain
42	chr8:38889000-38899600	Weak transcription	Fetal Lung	lung
43	chr8:38889600-38894400	Genic enhancers	Muscle Satellite Cultured Cells	--
44	chr8:38890000-38895800	Weak transcription	Sigmoid Colon	Sigmoid Colon
45	chr8:38890000-38904400	Weak transcription	Gastric	stomach
46	chr8:38890200-38895000	Weak transcription	Primary monocytes fromperipheralblood	blood
47	chr8:38890200-38895000	Weak transcription	Fetal Stomach	stomach
48	chr8:38890200-38895000	Weak transcription	Right Atrium	heart
49	chr8:38890200-38895200	Weak transcription	HUES48 Cell Line	embryonic stem cell
50	chr8:38890200-38895200	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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