Variant report

Variant	rs7838874
Chromosome Location	chr8:38866218-38866219
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:38864002..38868323-chr8:38871441..38875404,3	K562	blood:

Variant related genes	Relation type
ENSG00000168615	Chromatin interaction

Extended variants
information (count: 56 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10086693	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10089487	0.96[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10105311	0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10106085	0.95[CEU][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10113077	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10809000	0.82[CHB][hapmap]
rs10958813	0.94[JPT][hapmap];0.84[EUR][1000 genomes]
rs11777376	0.84[EUR][1000 genomes]
rs11784624	0.82[CHB][hapmap];0.80[CHD][hapmap]
rs11787126	0.81[CHB][hapmap];0.94[JPT][hapmap]
rs12056655	0.81[CHB][hapmap];0.88[GIH][hapmap];0.94[JPT][hapmap];0.83[TSI][hapmap];0.84[EUR][1000 genomes]
rs12541231	0.81[CHB][hapmap];0.88[GIH][hapmap];0.94[JPT][hapmap];0.83[TSI][hapmap]
rs12548006	0.88[GIH][hapmap];1.00[JPT][hapmap];0.83[TSI][hapmap]
rs12548948	0.81[CHB][hapmap];0.94[JPT][hapmap]
rs12549547	0.81[CHB][hapmap];0.94[JPT][hapmap]
rs13256952	0.81[CHB][hapmap];0.88[GIH][hapmap];0.94[JPT][hapmap];0.83[TSI][hapmap]
rs13268394	0.81[CHB][hapmap];0.88[GIH][hapmap];0.94[JPT][hapmap];0.83[TSI][hapmap];0.84[EUR][1000 genomes]
rs13274567	0.81[CHB][hapmap];0.94[JPT][hapmap]
rs13282047	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28641150	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs34138150	0.81[EUR][1000 genomes]
rs35534138	0.81[EUR][1000 genomes]
rs4075849	0.82[CHB][hapmap]
rs4128871	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4129095	0.81[CHB][hapmap];0.88[GIH][hapmap];0.94[JPT][hapmap];0.83[TSI][hapmap];0.81[EUR][1000 genomes]
rs4236755	0.83[TSI][hapmap]
rs4308699	0.83[TSI][hapmap]
rs4495395	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4543512	0.94[JPT][hapmap]
rs4601278	0.81[TSI][hapmap]
rs4733894	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs4733897	0.87[CHB][hapmap];0.88[JPT][hapmap];0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs4733901	0.81[EUR][1000 genomes]
rs4733905	0.88[GIH][hapmap];0.82[JPT][hapmap];0.83[TSI][hapmap]
rs4733959	0.82[JPT][hapmap]
rs4733964	0.87[CHB][hapmap];0.93[CHD][hapmap];0.88[JPT][hapmap];0.82[TSI][hapmap];0.89[ASN][1000 genomes]
rs4733970	0.81[EUR][1000 genomes]
rs4733980	0.80[TSI][hapmap]
rs6474515	0.88[ASN][1000 genomes]
rs6474516	0.80[CHB][hapmap];0.93[CHD][hapmap];0.88[JPT][hapmap];0.80[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs6474525	0.82[CHB][hapmap]
rs6981759	0.85[ASN][1000 genomes]
rs6991383	0.82[CHB][hapmap];0.84[CHD][hapmap]
rs7000059	0.87[ASN][1000 genomes]
rs7010131	0.88[ASN][1000 genomes]
rs7015505	0.82[CHB][hapmap];0.84[CHD][hapmap]
rs7818363	0.82[CHB][hapmap]
rs7821237	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7821437	0.82[CHB][hapmap]
rs7832284	0.82[CHB][hapmap]
rs7832578	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[TSI][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7834967	0.82[CHB][hapmap]
rs7840044	0.82[CHB][hapmap];0.81[CHD][hapmap]
rs9643904	0.81[CHB][hapmap];0.88[GIH][hapmap];0.94[JPT][hapmap]
rs9643906	0.93[JPT][hapmap]
rs9650347	0.82[CHB][hapmap]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs7838874	PLEKHA2	cis	lesional skin	skin_eQTL
rs7838874	TM2D2	cis	Muscle Skeletal	GTEx

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:38855800-38881600	Weak transcription	Fetal Kidney	kidney
2	chr8:38856600-38889600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr8:38856800-38866600	Weak transcription	Primary hematopoietic stem cells	blood
4	chr8:38856800-38866600	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr8:38856800-38869400	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr8:38856800-38869400	Weak transcription	Liver	Liver
7	chr8:38856800-38874400	Weak transcription	Brain Anterior Caudate	brain
8	chr8:38856800-38889600	Weak transcription	Colonic Mucosa	Colon
9	chr8:38857200-38881400	Weak transcription	Fetal Brain Female	brain
10	chr8:38857400-38872400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr8:38857600-38866400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr8:38857600-38869200	Weak transcription	Brain Angular Gyrus	brain
13	chr8:38857600-38872200	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr8:38858000-38874200	Weak transcription	Fetal Brain Male	brain
15	chr8:38858000-38874400	Weak transcription	Brain Cingulate Gyrus	brain
16	chr8:38858200-38867400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr8:38858200-38867800	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr8:38858200-38875200	Weak transcription	Esophagus	oesophagus
19	chr8:38859000-38866600	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr8:38860600-38869400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr8:38860600-38875000	Weak transcription	Gastric	stomach
22	chr8:38862400-38866600	Weak transcription	Lung	lung
23	chr8:38862400-38871000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr8:38862600-38884400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
25	chr8:38862800-38866400	Weak transcription	HUES48 Cell Line	embryonic stem cell
26	chr8:38862800-38866600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
27	chr8:38862800-38869400	Weak transcription	Duodenum Mucosa	Duodenum
28	chr8:38862800-38869400	Weak transcription	Pancreas	Pancrea
29	chr8:38862800-38873200	Weak transcription	Skeletal Muscle Male	skeletal muscle
30	chr8:38862800-38878200	Weak transcription	H9 Cell Line	embryonic stem cell
31	chr8:38863200-38866400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr8:38863200-38867000	Weak transcription	Hela-S3	cervix
33	chr8:38863200-38867800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
34	chr8:38863200-38867800	Weak transcription	Rectal Smooth Muscle	rectum
35	chr8:38863200-38869200	Weak transcription	Aorta	Aorta
36	chr8:38863200-38869200	Weak transcription	Brain Hippocampus Middle	brain
37	chr8:38863400-38866400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr8:38863400-38866600	Weak transcription	Duodenum Smooth Muscle	Duodenum
39	chr8:38863400-38866600	Weak transcription	HMEC	breast
40	chr8:38863400-38869200	Weak transcription	Adipose Nuclei	Adipose
41	chr8:38863400-38883200	Weak transcription	Brain Germinal Matrix	brain
42	chr8:38863600-38866600	Weak transcription	K562	blood
43	chr8:38863600-38866800	Weak transcription	Fetal Intestine Small	intestine
44	chr8:38863600-38881000	Weak transcription	Small Intestine	intestine
45	chr8:38864800-38866600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr8:38864800-38868600	Weak transcription	Placenta	Placenta
47	chr8:38864800-38870200	Strong transcription	NHEK	skin
48	chr8:38865000-38866400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr8:38865000-38867600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr8:38865000-38867600	Weak transcription	Placenta Amnion	Placenta Amnion

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