Variant report

Variant	rs7833430
Chromosome Location	chr8:38837122-38837123
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:38837076..38838935-chr8:38841015..38842870,2	MCF-7	breast:

Extended variants
information (count: 50 )
Associated
traits (count: 6 )

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10091297	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10093975	0.87[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.86[MKK][hapmap];0.81[TSI][hapmap];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10095616	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10441608	0.81[JPT][hapmap]
rs10809000	0.90[JPT][hapmap]
rs11784624	0.80[CHD][hapmap];0.86[JPT][hapmap]
rs12676405	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs28372047	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28523000	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28579045	0.87[ASN][1000 genomes]
rs28690874	0.83[ASN][1000 genomes]
rs4075849	0.86[JPT][hapmap]
rs4489297	0.87[ASN][1000 genomes]
rs4517088	0.86[JPT][hapmap]
rs4615534	0.82[JPT][hapmap]
rs4733962	0.96[CEU][hapmap];0.83[YRI][hapmap];0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4733964	0.84[CHD][hapmap]
rs56018450	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs6474514	0.89[CEU][hapmap];0.81[CHB][hapmap];0.97[GIH][hapmap];0.89[LWK][hapmap];0.87[MEX][hapmap];0.92[MKK][hapmap];0.93[TSI][hapmap];0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6474516	0.84[CHD][hapmap]
rs6474517	0.87[ASN][1000 genomes]
rs6474525	0.90[JPT][hapmap]
rs66513029	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6985572	0.84[CHD][hapmap]
rs6991383	0.84[CHD][hapmap];0.90[JPT][hapmap]
rs6991968	0.87[CHB][hapmap];0.94[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.88[TSI][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6997721	0.83[ASN][1000 genomes]
rs7001985	0.93[CHB][hapmap];0.95[JPT][hapmap];0.80[ASN][1000 genomes]
rs7006414	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7015505	0.84[CHD][hapmap];0.81[JPT][hapmap]
rs7295	0.81[CHB][hapmap];0.84[CHD][hapmap]
rs7814264	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7818363	0.90[JPT][hapmap]
rs7821437	0.90[JPT][hapmap]
rs7823125	0.88[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.89[MKK][hapmap];0.93[TSI][hapmap];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7826010	0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7830323	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7831735	0.88[CEU][hapmap];0.81[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.93[TSI][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7832284	0.85[JPT][hapmap]
rs7832975	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7834967	0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs7836422	0.84[CEU][hapmap];0.81[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.81[MKK][hapmap];0.95[TSI][hapmap];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7840044	0.81[CHD][hapmap];0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs7840270	0.82[CHB][hapmap];0.97[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.88[TSI][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7842543	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7842732	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7844927	0.87[ASN][1000 genomes]
rs9650347	0.90[JPT][hapmap]
rs9987126	0.84[CHD][hapmap]
rs9987222	0.92[CEU][hapmap];0.94[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];0.81[JPT][hapmap];0.96[MEX][hapmap];0.85[TSI][hapmap];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]

mRNA abundance (count:6)

SNP	Gene	Cis/trans	Tissue	Source
rs7833430	ADAM32	cis	Nerve Tibial	GTEx
rs7833430	ADAM32	cis	Adipose Subcutaneous	GTEx
rs7833430	TM2D2	cis	parietal	SCAN
rs7833430	TM2D2	cis	cerebellum	SCAN
rs7833430	ADAM32	cis	Artery Tibial	GTEx
rs7833430	PLEKHA2	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:38824000-38846400	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr8:38824200-38847800	Weak transcription	Brain Substantia Nigra	brain
3	chr8:38824200-38848400	Weak transcription	Brain Angular Gyrus	brain
4	chr8:38824200-38848800	Weak transcription	Brain Cingulate Gyrus	brain
5	chr8:38827800-38847600	Weak transcription	Small Intestine	intestine
6	chr8:38828000-38847600	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr8:38828000-38848000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr8:38828400-38848200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr8:38828800-38839400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr8:38828800-38848400	Weak transcription	HSMMtube	muscle
11	chr8:38829000-38838800	Weak transcription	Left Ventricle	heart
12	chr8:38829000-38847600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
13	chr8:38829000-38847600	Weak transcription	Hela-S3	cervix
14	chr8:38829000-38847800	Weak transcription	Aorta	Aorta
15	chr8:38829000-38847800	Weak transcription	Brain Hippocampus Middle	brain
16	chr8:38829000-38848400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
17	chr8:38830000-38847800	Weak transcription	Primary T helper cells PMA-I stimulated	--
18	chr8:38831400-38839600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr8:38831600-38848200	Weak transcription	Colon Smooth Muscle	Colon
20	chr8:38831800-38839800	Weak transcription	Primary T cells fromperipheralblood	blood
21	chr8:38831800-38847800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr8:38831800-38848400	Weak transcription	Stomach Smooth Muscle	stomach
23	chr8:38832000-38847800	Weak transcription	Rectal Mucosa Donor 31	rectum
24	chr8:38832000-38848000	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr8:38832000-38848200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
26	chr8:38832000-38848600	Weak transcription	Cortex derived primary cultured neurospheres	brain
27	chr8:38832200-38847800	Weak transcription	Duodenum Smooth Muscle	Duodenum
28	chr8:38832200-38848400	Weak transcription	Ovary	ovary
29	chr8:38832400-38839800	Weak transcription	Fetal Heart	heart
30	chr8:38832400-38845800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
31	chr8:38832400-38846600	Weak transcription	Primary T helper cells fromperipheralblood	blood
32	chr8:38832400-38846800	Weak transcription	Lung	lung
33	chr8:38832400-38847800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr8:38832400-38847800	Weak transcription	Brain Anterior Caudate	brain
35	chr8:38832400-38847800	Weak transcription	HMEC	breast
36	chr8:38832400-38848000	Weak transcription	Adipose Nuclei	Adipose
37	chr8:38832400-38848400	Weak transcription	Right Ventricle	heart
38	chr8:38832400-38848800	Weak transcription	Pancreas	Pancrea
39	chr8:38832600-38844200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr8:38832600-38846400	Weak transcription	Dnd41	blood
41	chr8:38832600-38847600	Weak transcription	Duodenum Mucosa	Duodenum
42	chr8:38832600-38848600	Weak transcription	Esophagus	oesophagus
43	chr8:38832600-38848800	Weak transcription	Gastric	stomach
44	chr8:38832600-38848800	Weak transcription	Rectal Smooth Muscle	rectum
45	chr8:38832600-38853000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
46	chr8:38832800-38839600	Weak transcription	Placenta Amnion	Placenta Amnion
47	chr8:38832800-38846600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
48	chr8:38832800-38847600	Weak transcription	Placenta	Placenta
49	chr8:38833000-38843800	Weak transcription	Primary monocytes fromperipheralblood	blood
50	chr8:38833000-38844200	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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