The 2.0 version of rSNPBase

Variant report

Variant rs7842543
Chromosome Location chr8:38847015-38847016
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:123 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr8:38824200-38847800 Weak transcription Brain Substantia Nigra brain
2 chr8:38824200-38848400 Weak transcription Brain Angular Gyrus brain
3 chr8:38824200-38848800 Weak transcription Brain Cingulate Gyrus brain
4 chr8:38827800-38847600 Weak transcription Small Intestine intestine
5 chr8:38828000-38847600 Weak transcription Skeletal Muscle Female skeletal muscle
6 chr8:38828000-38848000 Weak transcription Primary T killer naive cells fromperipheralblood blood
7 chr8:38828400-38848200 Weak transcription Primary T killer memory cells from peripheral blood blood
8 chr8:38828800-38848400 Weak transcription HSMMtube muscle
9 chr8:38829000-38847600 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
10 chr8:38829000-38847600 Weak transcription Hela-S3 cervix
11 chr8:38829000-38847800 Weak transcription Aorta Aorta
12 chr8:38829000-38847800 Weak transcription Brain Hippocampus Middle brain
13 chr8:38829000-38848400 Weak transcription Primary T helper 17 cells PMA-I stimulated --
14 chr8:38830000-38847800 Weak transcription Primary T helper cells PMA-I stimulated --
15 chr8:38831600-38848200 Weak transcription Colon Smooth Muscle Colon
16 chr8:38831800-38847800 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
17 chr8:38831800-38848400 Weak transcription Stomach Smooth Muscle stomach
18 chr8:38832000-38847800 Weak transcription Rectal Mucosa Donor 31 rectum
19 chr8:38832000-38848000 Weak transcription Sigmoid Colon Sigmoid Colon
20 chr8:38832000-38848200 Weak transcription Primary T helper naive cells fromperipheralblood blood
21 chr8:38832000-38848600 Weak transcription Cortex derived primary cultured neurospheres brain
22 chr8:38832200-38847800 Weak transcription Duodenum Smooth Muscle Duodenum
23 chr8:38832200-38848400 Weak transcription Ovary ovary
24 chr8:38832400-38847800 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
25 chr8:38832400-38847800 Weak transcription Brain Anterior Caudate brain
26 chr8:38832400-38847800 Weak transcription HMEC breast
27 chr8:38832400-38848000 Weak transcription Adipose Nuclei Adipose
28 chr8:38832400-38848400 Weak transcription Right Ventricle heart
29 chr8:38832400-38848800 Weak transcription Pancreas Pancrea
30 chr8:38832600-38847600 Weak transcription Duodenum Mucosa Duodenum
31 chr8:38832600-38848600 Weak transcription Esophagus oesophagus
32 chr8:38832600-38848800 Weak transcription Gastric stomach
33 chr8:38832600-38848800 Weak transcription Rectal Smooth Muscle rectum
34 chr8:38832600-38853000 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
35 chr8:38832800-38847600 Weak transcription Placenta Placenta
36 chr8:38833200-38847600 Weak transcription Primary neutrophils fromperipheralblood blood
37 chr8:38833200-38847800 Weak transcription Thymus Thymus
38 chr8:38834400-38847600 Weak transcription A549 lung
39 chr8:38835200-38847600 Weak transcription NH-A brain
40 chr8:38835400-38847400 Weak transcription HUES48 Cell Line embryonic stem cell
41 chr8:38835400-38847400 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
42 chr8:38835600-38847600 Weak transcription iPS-18 Cell Line embryonic stem cell
43 chr8:38835600-38847600 Weak transcription GM12878-XiMat blood
44 chr8:38835600-38847800 Weak transcription H9 Cell Line embryonic stem cell
45 chr8:38835800-38848800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
46 chr8:38836400-38848400 Weak transcription Spleen Spleen
47 chr8:38840200-38847800 Weak transcription Left Ventricle heart
48 chr8:38840400-38847800 Weak transcription Fetal Lung lung
49 chr8:38840400-38848200 Weak transcription HSMM muscle
50 chr8:38840600-38847600 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell

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Last update: Aug 31, 2015