Variant report

Variant	rs10958812
Chromosome Location	chr8:38817412-38817413
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:38808571..38813018-chr8:38815096..38820792,6	K562	blood:
2	chr8:38815665..38817744-chr8:38826216..38828410,2	K562	blood:
3	chr8:38814756..38818427-chr8:38822560..38824207,3	K562	blood:

Variant related genes	Relation type
ENSG00000169499	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 7 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs4301415	0.81[AFR][1000 genomes];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4404880	0.96[CEU][hapmap];0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4733893	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4733958	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4733959	0.80[TSI][hapmap]
rs6981759	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6985572	0.82[ASW][hapmap];0.84[CEU][hapmap];0.95[GIH][hapmap];0.84[LWK][hapmap];0.85[MEX][hapmap];0.86[MKK][hapmap];0.82[TSI][hapmap];0.88[YRI][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6998440	0.88[LWK][hapmap];0.88[YRI][hapmap]
rs7007639	0.88[YRI][hapmap]
rs7295	0.88[CEU][hapmap];0.95[GIH][hapmap];0.85[MEX][hapmap];0.84[MKK][hapmap];0.84[TSI][hapmap];0.88[EUR][1000 genomes]
rs9692838	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9987126	0.82[ASW][hapmap];0.84[CEU][hapmap];0.95[GIH][hapmap];0.88[LWK][hapmap];0.85[MEX][hapmap];0.86[MKK][hapmap];0.80[TSI][hapmap];0.88[YRI][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]

mRNA abundance (count:7)

SNP	Gene	Cis/trans	Tissue	Source
rs10958812	PLEKHA2	cis	lymphoblastoid	seeQTL
rs10958812	DDHD2	cis	cerebellum	SCAN
rs10958812	ADAM32	cis	cerebellum	SCAN
rs10958812	ADAM32	cis	parietal	SCAN
rs10958812	TM2D2	cis	cerebellum	SCAN
rs10958812	TM2D2	cis	multi-tissue	Pritchard
rs10958812	TM2D2	cis	parietal	SCAN

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:38795800-38830600	Weak transcription	Fetal Kidney	kidney
2	chr8:38797000-38831200	Weak transcription	Psoas Muscle	Psoas
3	chr8:38798800-38820600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr8:38799000-38820800	Strong transcription	Stomach Smooth Muscle	stomach
5	chr8:38799000-38822000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr8:38799600-38821200	Strong transcription	Hela-S3	cervix
7	chr8:38800000-38820000	Strong transcription	Fetal Stomach	stomach
8	chr8:38800400-38822800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr8:38801600-38819200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
10	chr8:38801600-38819600	Strong transcription	Primary T helper cells fromperipheralblood	blood
11	chr8:38801800-38818200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
12	chr8:38802000-38817800	Strong transcription	Primary T cells from cord blood	blood
13	chr8:38802600-38819600	Strong transcription	Primary T cells fromperipheralblood	blood
14	chr8:38802800-38818200	Strong transcription	Primary T helper cells PMA-I stimulated	--
15	chr8:38802800-38831000	Weak transcription	K562	blood
16	chr8:38805600-38818800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr8:38806000-38817600	Strong transcription	Thymus	Thymus
18	chr8:38806200-38820200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr8:38806600-38820200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr8:38807000-38820200	Strong transcription	Fetal Lung	lung
21	chr8:38807200-38818800	Strong transcription	Dnd41	blood
22	chr8:38807600-38818000	Strong transcription	Fetal Intestine Large	intestine
23	chr8:38807800-38820000	Strong transcription	Fetal Intestine Small	intestine
24	chr8:38808000-38818800	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
25	chr8:38808200-38817800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr8:38808200-38819600	Strong transcription	Primary T helper naive cells from peripheral blood	blood
27	chr8:38808400-38817600	Strong transcription	Primary T helper memory cells from peripheral blood 2	blood
28	chr8:38809000-38818600	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr8:38809000-38820200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr8:38809400-38820600	Strong transcription	Placenta Amnion	Placenta Amnion
31	chr8:38809600-38820000	Strong transcription	HMEC	breast
32	chr8:38810000-38817600	Strong transcription	NHEK	skin
33	chr8:38810200-38831000	Weak transcription	H9 Cell Line	embryonic stem cell
34	chr8:38811800-38819800	Weak transcription	Fetal Heart	heart
35	chr8:38811800-38823800	Weak transcription	Fetal Brain Male	brain
36	chr8:38813200-38817600	Strong transcription	Colonic Mucosa	Colon
37	chr8:38814000-38826000	Weak transcription	Pancreas	Pancrea
38	chr8:38814600-38817600	Strong transcription	Primary T killer memory cells from peripheral blood	blood
39	chr8:38814600-38818400	Strong transcription	Lung	lung
40	chr8:38814800-38823200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr8:38815000-38820600	Genic enhancers	Primary B cells from peripheral blood	blood
42	chr8:38815000-38823600	Weak transcription	Brain Angular Gyrus	brain
43	chr8:38815600-38818000	Strong transcription	Sigmoid Colon	Sigmoid Colon
44	chr8:38815600-38818200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr8:38815600-38818800	Strong transcription	Primary hematopoietic stem cells	blood
46	chr8:38815600-38820000	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr8:38815600-38820000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr8:38815600-38820000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
49	chr8:38815600-38820600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr8:38815600-38820800	Strong transcription	Muscle Satellite Cultured Cells	--

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