Variant report

Variant	rs7000719
Chromosome Location	chr8:79111153-79111154
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs16905564	1.00[AMR][1000 genomes]
rs16905595	1.00[AMR][1000 genomes]
rs16939632	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73247005	1.00[AMR][1000 genomes]
rs73247026	1.00[AMR][1000 genomes]
rs73248945	1.00[AMR][1000 genomes]
rs73250878	1.00[AMR][1000 genomes]
rs73250879	1.00[AMR][1000 genomes]
rs73252342	1.00[AMR][1000 genomes]
rs73252344	1.00[AMR][1000 genomes]
rs73252346	1.00[AMR][1000 genomes]
rs7832285	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831364	chr8:79034769-79223319	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv982138	chr8:79106680-79116734	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv891055	chr8:79110386-79256864	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:79108200-79113000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr8:79109400-79111400	Enhancers	Osteobl	bone
3	chr8:79109400-79112800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr8:79109400-79113000	Enhancers	Muscle Satellite Cultured Cells	--
5	chr8:79109400-79113200	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr8:79109400-79113200	Enhancers	Monocytes-CD14+_RO01746	blood
7	chr8:79110000-79111200	Weak transcription	Hela-S3	cervix
8	chr8:79110000-79112000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr8:79110000-79112000	Weak transcription	HMEC	breast
10	chr8:79110400-79112200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr8:79110800-79112400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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