Variant report

Variant	rs73252342
Chromosome Location	chr8:79173763-79173764
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs16905564	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16905595	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16939632	1.00[AMR][1000 genomes]
rs6997546	0.87[AFR][1000 genomes]
rs7000719	1.00[AMR][1000 genomes]
rs73247005	1.00[AMR][1000 genomes]
rs73247026	1.00[AMR][1000 genomes]
rs73248945	1.00[AMR][1000 genomes]
rs73250878	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73250879	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73252344	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73252346	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7832285	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831364	chr8:79034769-79223319	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv891055	chr8:79110386-79256864	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv831365	chr8:79128833-79281645	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv6266	chr8:79156823-79202020	Enhancers Weak transcription Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:79171800-79176200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr8:79172000-79176000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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