Variant report

Variant	rs700968
Chromosome Location	chr9:98506107-98506108
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10122205	0.89[ASN][1000 genomes]
rs1068998	0.81[EUR][1000 genomes]
rs12375628	0.90[ASN][1000 genomes]
rs1865420	0.90[ASN][1000 genomes]
rs414610	0.81[GIH][hapmap]
rs465167	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4743276	0.90[ASN][1000 genomes]
rs4743292	0.87[CHB][hapmap]
rs4743293	0.89[GIH][hapmap]
rs700964	0.88[ASN][1000 genomes]
rs7035926	0.90[ASN][1000 genomes]
rs7864076	0.87[CHB][hapmap]
rs817152	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs700968	ASPN	cis	parietal	SCAN
rs700968	SLC35D2	cis	parietal	SCAN
rs700968	FBP1	cis	parietal	SCAN

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:98504800-98509200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr9:98505000-98508600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr9:98505400-98510600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr9:98505600-98506800	Weak transcription	HepG2	liver
5	chr9:98506000-98506200	Enhancers	H9 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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