Variant report

Variant	rs7864076
Chromosome Location	chr9:98523829-98523830
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1961197	0.86[EUR][1000 genomes]
rs4743288	0.88[EUR][1000 genomes]
rs4743292	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4743293	0.83[CHB][hapmap];0.86[JPT][hapmap];0.82[ASN][1000 genomes]
rs6478906	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6478962	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7025850	0.90[ASN][1000 genomes]
rs7848744	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7857753	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs933013	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893598	chr9:98508628-98645674	Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:98514800-98527200	Weak transcription	Rectal Smooth Muscle	rectum
2	chr9:98516600-98527200	Weak transcription	Fetal Intestine Large	intestine
3	chr9:98518200-98526200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr9:98518200-98528800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr9:98519800-98526400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr9:98520000-98526200	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr9:98520000-98526200	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr9:98520000-98526200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr9:98520000-98526200	Weak transcription	HepG2	liver
10	chr9:98520000-98527200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr9:98520800-98524800	Weak transcription	GM12878-XiMat	blood
12	chr9:98521800-98526400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr9:98523000-98524000	Enhancers	Fetal Stomach	stomach
14	chr9:98523400-98524200	Enhancers	Stomach Smooth Muscle	stomach
15	chr9:98523400-98526400	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr9:98523400-98526400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr9:98523600-98526200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr9:98523600-98526400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr9:98523600-98526600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr9:98523600-98526800	Weak transcription	Colon Smooth Muscle	Colon
21	chr9:98523800-98526200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr9:98523800-98526400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr9:98523800-98526400	Weak transcription	Fetal Lung	lung

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