Variant report

Variant	rs933013
Chromosome Location	chr9:98516196-98516197
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:98498306..98500300-chr9:98515480..98517828,2	K562	blood:

Extended variants
information (count: 17 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10122205	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12375628	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs1865420	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs4743276	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs4743288	0.81[EUR][1000 genomes]
rs4743292	0.95[CHB][hapmap];0.83[JPT][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4743293	0.82[CHD][hapmap];0.95[GIH][hapmap];0.92[MEX][hapmap];0.85[TSI][hapmap];0.80[EUR][1000 genomes]
rs6478906	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6478962	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs700964	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7025850	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7035926	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7848744	0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7857753	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7864076	0.95[CHB][hapmap];0.83[JPT][hapmap];0.91[ASN][1000 genomes]
rs817152	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893598	chr9:98508628-98645674	Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs933013	NOL8	cis	parietal	SCAN

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:98513600-98516400	Weak transcription	Duodenum Mucosa	Duodenum
2	chr9:98514800-98516600	Enhancers	Colonic Mucosa	Colon
3	chr9:98514800-98516800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
4	chr9:98514800-98519000	Enhancers	Ovary	ovary
5	chr9:98514800-98527200	Weak transcription	Rectal Smooth Muscle	rectum
6	chr9:98515000-98516600	Weak transcription	Spleen	Spleen
7	chr9:98515200-98516200	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
8	chr9:98515200-98517200	Enhancers	Skeletal Muscle Male	skeletal muscle
9	chr9:98515200-98517800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr9:98515200-98517800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr9:98515200-98518000	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
12	chr9:98515200-98518400	Enhancers	Fetal Muscle Leg	muscle
13	chr9:98515200-98520000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
14	chr9:98515200-98520400	Enhancers	Fetal Stomach	stomach
15	chr9:98515400-98516200	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
16	chr9:98515400-98516200	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
17	chr9:98515400-98516800	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
18	chr9:98515400-98517000	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
19	chr9:98515400-98518200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr9:98515400-98518600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr9:98515600-98516200	Flanking Active TSS	Stomach Smooth Muscle	stomach
22	chr9:98515600-98516600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr9:98515600-98516600	Enhancers	NHLF	lung
24	chr9:98515600-98516800	Enhancers	Colon Smooth Muscle	Colon
25	chr9:98515600-98518400	Enhancers	Right Atrium	heart
26	chr9:98515800-98516200	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
27	chr9:98515800-98516200	Flanking Active TSS	Fetal Lung	lung
28	chr9:98515800-98516400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr9:98515800-98516400	Bivalent Enhancer	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr9:98515800-98516600	Enhancers	HSMMtube	muscle
31	chr9:98515800-98516800	Enhancers	Brain Hippocampus Middle	brain
32	chr9:98515800-98517200	Enhancers	Placenta	Placenta
33	chr9:98515800-98517400	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr9:98515800-98517600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr9:98515800-98517600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr9:98515800-98517600	Enhancers	Fetal Heart	heart
37	chr9:98515800-98517800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr9:98515800-98518800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
39	chr9:98516000-98516200	Flanking Bivalent TSS/Enh	H9 Cell Line	embryonic stem cell
40	chr9:98516000-98516400	Bivalent Enhancer	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
41	chr9:98516000-98516400	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr9:98516000-98516400	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
43	chr9:98516000-98516400	Flanking Active TSS	Adipose Nuclei	Adipose
44	chr9:98516000-98516400	Enhancers	Right Ventricle	heart
45	chr9:98516000-98516400	Flanking Active TSS	HepG2	liver
46	chr9:98516000-98516600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr9:98516000-98516600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr9:98516000-98516600	Enhancers	Liver	Liver
49	chr9:98516000-98516600	Enhancers	Brain Angular Gyrus	brain
50	chr9:98516000-98516600	Enhancers	Brain Anterior Caudate	brain

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