Variant report

Variant	rs6478906
Chromosome Location	chr9:98515367-98515368
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10122205	0.84[ASN][1000 genomes]
rs12375628	0.84[ASN][1000 genomes]
rs1865420	0.84[ASN][1000 genomes]
rs1961197	0.94[EUR][1000 genomes]
rs4743276	0.84[ASN][1000 genomes]
rs4743288	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4743292	0.89[ASN][1000 genomes]
rs6478962	0.90[ASN][1000 genomes]
rs700964	0.82[ASN][1000 genomes]
rs7025850	0.98[ASN][1000 genomes]
rs7035926	0.84[ASN][1000 genomes]
rs7848744	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7857753	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7864076	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs817152	0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs933013	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893598	chr9:98508628-98645674	Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases
2	esv3339519	chr9:98512656-98515504	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv3506859	chr9:98513056-98515529	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv3506860	chr9:98513056-98515529	Bivalent/Poised TSS Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:98512200-98515800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr9:98513400-98515600	Weak transcription	HepG2	liver
3	chr9:98513600-98516400	Weak transcription	Duodenum Mucosa	Duodenum
4	chr9:98514200-98515400	Active TSS	H9 Cell Line	embryonic stem cell
5	chr9:98514200-98515400	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
6	chr9:98514200-98515400	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
7	chr9:98514400-98515800	Enhancers	Fetal Lung	lung
8	chr9:98514600-98516000	Weak transcription	Pancreas	Pancrea
9	chr9:98514800-98515400	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
10	chr9:98514800-98515600	Weak transcription	Colon Smooth Muscle	Colon
11	chr9:98514800-98515600	Enhancers	Stomach Smooth Muscle	stomach
12	chr9:98514800-98516000	Weak transcription	Right Ventricle	heart
13	chr9:98514800-98516600	Enhancers	Colonic Mucosa	Colon
14	chr9:98514800-98516800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
15	chr9:98514800-98519000	Enhancers	Ovary	ovary
16	chr9:98514800-98527200	Weak transcription	Rectal Smooth Muscle	rectum
17	chr9:98515000-98515400	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
18	chr9:98515000-98516000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr9:98515000-98516600	Weak transcription	Spleen	Spleen
20	chr9:98515200-98515400	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
21	chr9:98515200-98515400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr9:98515200-98515600	Weak transcription	Right Atrium	heart
23	chr9:98515200-98516000	Enhancers	Adipose Nuclei	Adipose
24	chr9:98515200-98516200	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
25	chr9:98515200-98517200	Enhancers	Skeletal Muscle Male	skeletal muscle
26	chr9:98515200-98517800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr9:98515200-98517800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
28	chr9:98515200-98518000	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
29	chr9:98515200-98518400	Enhancers	Fetal Muscle Leg	muscle
30	chr9:98515200-98520000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
31	chr9:98515200-98520400	Enhancers	Fetal Stomach	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links