Variant report

Variant	rs7848744
Chromosome Location	chr9:98520067-98520068
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10122205	0.81[ASN][1000 genomes]
rs12375628	0.81[ASN][1000 genomes]
rs1865420	0.81[ASN][1000 genomes]
rs1961197	0.91[EUR][1000 genomes]
rs4743276	0.81[ASN][1000 genomes]
rs4743288	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4743292	0.91[ASN][1000 genomes]
rs6478906	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6478962	0.92[ASN][1000 genomes]
rs7025850	0.94[ASN][1000 genomes]
rs7035926	0.81[ASN][1000 genomes]
rs7857753	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7864076	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs817152	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs933013	0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893598	chr9:98508628-98645674	Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:98514800-98527200	Weak transcription	Rectal Smooth Muscle	rectum
2	chr9:98515200-98520400	Enhancers	Fetal Stomach	stomach
3	chr9:98516400-98520200	Enhancers	Adipose Nuclei	Adipose
4	chr9:98516600-98527200	Weak transcription	Fetal Intestine Large	intestine
5	chr9:98517600-98522400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr9:98518200-98522200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr9:98518200-98526200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr9:98518200-98528800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr9:98518600-98520200	Enhancers	H1 Cell Line	embryonic stem cell
10	chr9:98518600-98520400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr9:98519000-98520200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr9:98519000-98520200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr9:98519000-98520400	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr9:98519200-98520200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
15	chr9:98519200-98520200	Enhancers	Fetal Kidney	kidney
16	chr9:98519200-98520200	Enhancers	Stomach Smooth Muscle	stomach
17	chr9:98519200-98520400	Enhancers	Fetal Muscle Leg	muscle
18	chr9:98519400-98520200	Enhancers	Colon Smooth Muscle	Colon
19	chr9:98519400-98520200	Enhancers	NHLF	lung
20	chr9:98519400-98520800	Enhancers	GM12878-XiMat	blood
21	chr9:98519600-98520200	Enhancers	Breast Myoepithelial Primary Cells	Breast
22	chr9:98519600-98520200	Enhancers	Skeletal Muscle Male	skeletal muscle
23	chr9:98519600-98520200	Enhancers	Skeletal Muscle Female	skeletal muscle
24	chr9:98519600-98523200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr9:98519800-98521600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr9:98519800-98526400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr9:98520000-98520400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr9:98520000-98520400	Enhancers	Fetal Muscle Trunk	muscle
29	chr9:98520000-98523200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr9:98520000-98523200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr9:98520000-98523200	Weak transcription	Fetal Lung	lung
32	chr9:98520000-98526200	Weak transcription	HUES48 Cell Line	embryonic stem cell
33	chr9:98520000-98526200	Weak transcription	HUES6 Cell Line	embryonic stem cell
34	chr9:98520000-98526200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
35	chr9:98520000-98526200	Weak transcription	HepG2	liver
36	chr9:98520000-98527200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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