Variant report

Variant	rs817152
Chromosome Location	chr9:98510177-98510178
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10122205	0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1068998	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12375628	0.86[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1865420	0.86[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs465167	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4743276	0.86[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs6478906	0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs700964	0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs700968	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7025850	0.80[ASN][1000 genomes]
rs7035926	0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7848744	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7857753	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs933013	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893598	chr9:98508628-98645674	Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:98505400-98510600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr9:98509800-98512600	Weak transcription	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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