Variant report

Variant	rs4743276
Chromosome Location	chr9:98512161-98512162
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10122205	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12375628	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1865420	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs465167	0.90[ASN][1000 genomes]
rs4743292	0.91[CHB][hapmap];0.83[JPT][hapmap]
rs4743293	0.82[CHB][hapmap];0.93[GIH][hapmap];0.84[TSI][hapmap]
rs6478906	0.84[ASN][1000 genomes]
rs700964	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs700968	0.90[ASN][1000 genomes]
rs7025850	0.87[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs7035926	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7848744	0.81[ASN][1000 genomes]
rs7857753	0.84[ASN][1000 genomes]
rs7864076	0.91[CHB][hapmap];0.83[JPT][hapmap]
rs817152	0.86[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs933013	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893598	chr9:98508628-98645674	Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:98509800-98512600	Weak transcription	HepG2	liver
2	chr9:98510400-98514200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr9:98511000-98512400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr9:98511600-98513200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
5	chr9:98511600-98514000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
6	chr9:98511800-98512200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr9:98511800-98513200	Enhancers	Primary T helper naive cells from peripheral blood	blood
8	chr9:98511800-98513200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
9	chr9:98511800-98513200	Enhancers	Primary T helper cells PMA-I stimulated	--
10	chr9:98511800-98513600	Enhancers	Fetal Thymus	thymus
11	chr9:98511800-98514000	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
12	chr9:98511800-98514000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
13	chr9:98511800-98514000	Enhancers	Primary T helper cells fromperipheralblood	blood
14	chr9:98512000-98513000	Enhancers	Primary T cells from cord blood	blood
15	chr9:98512000-98513000	Enhancers	Primary T killer memory cells from peripheral blood	blood
16	chr9:98512000-98514200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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