Variant report

Variant	rs7025850
Chromosome Location	chr9:98514536-98514537
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10122205	0.87[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs12375628	0.87[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs1865420	0.83[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs4743276	0.87[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs4743292	0.88[ASN][1000 genomes]
rs6478906	0.98[ASN][1000 genomes]
rs6478962	0.90[ASN][1000 genomes]
rs700964	0.81[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs7035926	0.87[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs7848744	0.94[ASN][1000 genomes]
rs7857753	0.97[ASN][1000 genomes]
rs7864076	0.90[ASN][1000 genomes]
rs817152	0.80[ASN][1000 genomes]
rs933013	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893598	chr9:98508628-98645674	Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases
2	esv3339519	chr9:98512656-98515504	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv3506859	chr9:98513056-98515529	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv3506860	chr9:98513056-98515529	Bivalent/Poised TSS Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv3438788	chr9:98513431-98514979	Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:98512200-98515800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr9:98513400-98515600	Weak transcription	HepG2	liver
3	chr9:98513600-98514800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
4	chr9:98513600-98516400	Weak transcription	Duodenum Mucosa	Duodenum
5	chr9:98514200-98514600	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr9:98514200-98514600	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
7	chr9:98514200-98514600	Enhancers	Primary T helper naive cells from peripheral blood	blood
8	chr9:98514200-98514800	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
9	chr9:98514200-98514800	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
10	chr9:98514200-98514800	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr9:98514200-98514800	Active TSS	Breast Myoepithelial Primary Cells	Breast
12	chr9:98514200-98515000	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr9:98514200-98515000	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr9:98514200-98515000	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
15	chr9:98514200-98515000	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
16	chr9:98514200-98515200	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
17	chr9:98514200-98515200	Bivalent/Poised TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr9:98514200-98515200	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
19	chr9:98514200-98515200	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
20	chr9:98514200-98515400	Active TSS	H9 Cell Line	embryonic stem cell
21	chr9:98514200-98515400	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
22	chr9:98514200-98515400	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
23	chr9:98514400-98514600	Flanking Bivalent TSS/Enh	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr9:98514400-98514600	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood
25	chr9:98514400-98514600	Flanking Bivalent TSS/Enh	Primary T helper cells fromperipheralblood	blood
26	chr9:98514400-98514600	Bivalent Enhancer	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr9:98514400-98514600	Active TSS	Brain Cingulate Gyrus	brain
28	chr9:98514400-98514600	Flanking Bivalent TSS/Enh	Brain Hippocampus Middle	brain
29	chr9:98514400-98514600	Flanking Bivalent TSS/Enh	Brain Inferior Temporal Lobe	brain
30	chr9:98514400-98514600	Bivalent/Poised TSS	Colon Smooth Muscle	Colon
31	chr9:98514400-98514600	Flanking Bivalent TSS/Enh	Duodenum Smooth Muscle	Duodenum
32	chr9:98514400-98514600	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
33	chr9:98514400-98514600	Bivalent/Poised TSS	Fetal Brain Female	brain
34	chr9:98514400-98514600	Flanking Bivalent TSS/Enh	Fetal Intestine Small	intestine
35	chr9:98514400-98514600	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
36	chr9:98514400-98514600	Flanking Bivalent TSS/Enh	Fetal Stomach	stomach
37	chr9:98514400-98514600	Enhancers	Pancreas	Pancrea
38	chr9:98514400-98514600	Bivalent Enhancer	Placenta Amnion	Placenta Amnion
39	chr9:98514400-98514600	Flanking Active TSS	Right Ventricle	heart
40	chr9:98514400-98514800	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr9:98514400-98514800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
42	chr9:98514400-98514800	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
43	chr9:98514400-98514800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
44	chr9:98514400-98514800	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin01	Skin
45	chr9:98514400-98514800	Flanking Active TSS	Ovary	ovary
46	chr9:98514400-98514800	Active TSS	Rectal Smooth Muscle	rectum
47	chr9:98514400-98514800	Flanking Active TSS	Right Atrium	heart
48	chr9:98514400-98514800	Flanking Active TSS	Stomach Smooth Muscle	stomach
49	chr9:98514400-98515000	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
50	chr9:98514400-98515000	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin03	Skin

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