Variant report

Variant	rs7019701
Chromosome Location	chr9:96813620-96813621
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs6479524	0.93[AFR][1000 genomes]
rs7024817	0.85[AMR][1000 genomes]
rs7039624	0.85[AMR][1000 genomes]
rs7851301	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7852992	0.91[AFR][1000 genomes]
rs7855941	0.95[AFR][1000 genomes]
rs7866977	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893589	chr9:96624645-96884544	Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96794200-96828000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr9:96795400-96823800	Weak transcription	Left Ventricle	heart
3	chr9:96798200-96822400	Weak transcription	Fetal Lung	lung
4	chr9:96800000-96818600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr9:96812800-96814200	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr9:96813200-96813800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr9:96813600-96820200	Weak transcription	Fetal Stomach	stomach
8	chr9:96813600-96823400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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