Variant report

Variant	rs7851301
Chromosome Location	chr9:96820246-96820247
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:96791597..96793699-chr9:96819130..96821432,2	MCF-7	breast:
2	chr9:96818612..96820878-chr9:96928504..96930308,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000158079	Chromatin interaction
ENSG00000269946	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs7019701	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7852992	0.80[AFR][1000 genomes]
rs7855941	0.80[AFR][1000 genomes]
rs7863033	0.94[AFR][1000 genomes]
rs7866977	0.83[AMR][1000 genomes]
rs9775488	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893589	chr9:96624645-96884544	Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv482457	chr9:96813852-96996170	Strong transcription Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	217 gene(s)	inside rSNPs	diseases
3	nsv1043704	chr9:96816552-96873018	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96794200-96828000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr9:96795400-96823800	Weak transcription	Left Ventricle	heart
3	chr9:96798200-96822400	Weak transcription	Fetal Lung	lung
4	chr9:96813600-96823400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr9:96817200-96822400	Weak transcription	Brain Hippocampus Middle	brain
6	chr9:96817400-96822800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr9:96817800-96823000	Weak transcription	Right Ventricle	heart
8	chr9:96818200-96823800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr9:96818400-96823000	Weak transcription	Fetal Muscle Trunk	muscle
10	chr9:96819000-96833400	Weak transcription	HSMM	muscle
11	chr9:96819200-96822600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr9:96819200-96823000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr9:96819200-96823000	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr9:96819200-96823800	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr9:96819200-96824000	Weak transcription	Stomach Smooth Muscle	stomach
16	chr9:96819400-96823600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr9:96819400-96823600	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr9:96819400-96823800	Weak transcription	Aorta	Aorta
19	chr9:96819400-96828000	Weak transcription	Rectal Smooth Muscle	rectum
20	chr9:96819400-96832800	Weak transcription	HSMMtube	muscle
21	chr9:96819600-96821800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr9:96819600-96822200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr9:96819600-96823000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr9:96819600-96823000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
25	chr9:96819600-96823800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr9:96819600-96823800	Weak transcription	NHEK	skin
27	chr9:96819600-96824000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr9:96819600-96827600	Weak transcription	Muscle Satellite Cultured Cells	--
29	chr9:96819600-96828000	Weak transcription	NHDF-Ad	bronchial
30	chr9:96819800-96822800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr9:96819800-96823400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr9:96820000-96820400	Enhancers	Fetal Intestine Small	intestine
33	chr9:96820000-96820600	Enhancers	Fetal Intestine Large	intestine
34	chr9:96820200-96820600	Enhancers	Pancreas	Pancrea
35	chr9:96820200-96820800	Enhancers	HepG2	liver
36	chr9:96820200-96821000	Strong transcription	Fetal Muscle Leg	muscle
37	chr9:96820200-96821000	Strong transcription	Fetal Stomach	stomach

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