Variant report

Variant	rs7866977
Chromosome Location	chr9:96859655-96859656
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOS	chr9:96858808-96860538	MCF10A-Er-Src	breast:	n/a	chr9:96859358-96859368 chr9:96859358-96859368 chr9:96859359-96859366 chr9:96859358-96859368 chr9:96859359-96859367 chr9:96859358-96859368 chr9:96859359-96859367
2	MYC	chr9:96859008-96860391	MCF10A-Er-Src	breast:	n/a	chr9:96859359-96859368
3	MAFK	chr9:96859338-96860300	IMR90	lung:	n/a	chr9:96859641-96859656
4	MAFK	chr9:96859483-96859818	K562	blood:	n/a	chr9:96859641-96859656
5	MAFF	chr9:96859492-96859959	K562	blood:	n/a	chr9:96859639-96859657
6	FOSL1	chr9:96858969-96860686	HCT-116	colon:	n/a	chr9:96859358-96859368 chr9:96859358-96859368 chr9:96859359-96859366 chr9:96859358-96859368 chr9:96859359-96859367 chr9:96859358-96859368 chr9:96859359-96859367
7	MAFK	chr9:96859480-96859826	HepG2	liver:	n/a	chr9:96859641-96859656
8	FOS	chr9:96859141-96859755	MCF10A-Er-Src	breast:	n/a	chr9:96859358-96859368 chr9:96859358-96859368 chr9:96859359-96859366 chr9:96859358-96859368 chr9:96859359-96859367 chr9:96859358-96859368 chr9:96859359-96859367
9	MAFF	chr9:96859539-96859780	HepG2	liver:	n/a	chr9:96859639-96859657
10	MAFK	chr9:96859479-96859795	HepG2	liver:	n/a	chr9:96859641-96859656
11	SP1	chr9:96859000-96859687	HCT-116	colon:	n/a	n/a
12	FOS	chr9:96858886-96860404	MCF10A-Er-Src	breast:	n/a	chr9:96859358-96859368 chr9:96859358-96859368 chr9:96859359-96859366 chr9:96859358-96859368 chr9:96859359-96859367 chr9:96859358-96859368 chr9:96859359-96859367

No.	Distal block	Cell Line	Cell type
1	chr9:96858833..96861735-chr9:96944084..96946628,2	K562	blood:
2	chr9:96857107..96860210-chr9:96870662..96873792,3	MCF-7	breast:
3	chr9:96858917..96860519-chr9:133389418..133391095,2	K562	blood:
4	chr9:96855901..96860991-chr9:96926600..96930762,9	MCF-7	breast:
5	chr9:96825007..96827841-chr9:96858083..96859846,2	K562	blood:

Variant related genes	Relation type
PTPDC1	TF binding region
ENSG00000269946	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10116369	1.00[MEX][hapmap]
rs6479524	1.00[ASW][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];0.93[YRI][hapmap];0.83[AFR][1000 genomes]
rs7019701	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7024817	1.00[MEX][hapmap];0.85[AMR][1000 genomes]
rs7039624	1.00[MEX][hapmap];0.85[AMR][1000 genomes]
rs7851301	0.83[AMR][1000 genomes]
rs7852992	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];0.93[YRI][hapmap];0.88[AFR][1000 genomes]
rs7855941	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893589	chr9:96624645-96884544	Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv482457	chr9:96813852-96996170	Strong transcription Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	217 gene(s)	inside rSNPs	diseases
3	nsv1043704	chr9:96816552-96873018	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv831655	chr9:96834042-97042009	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	218 gene(s)	inside rSNPs	diseases
5	nsv893591	chr9:96849137-96883271	Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
6	esv2761543	chr9:96857735-96875582	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96822400-96859800	Weak transcription	Psoas Muscle	Psoas
2	chr9:96824200-96860000	Weak transcription	Aorta	Aorta
3	chr9:96824200-96869600	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr9:96828200-96860800	Weak transcription	Primary T helper cells fromperipheralblood	blood
5	chr9:96828200-96862000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr9:96828200-96868200	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr9:96829600-96872400	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr9:96832000-96859800	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr9:96834400-96859800	Weak transcription	Duodenum Mucosa	Duodenum
10	chr9:96835400-96861800	Weak transcription	Primary B cells from cord blood	blood
11	chr9:96837200-96859800	Weak transcription	Fetal Intestine Small	intestine
12	chr9:96837400-96860200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr9:96840200-96863600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr9:96845600-96885400	Weak transcription	Gastric	stomach
15	chr9:96846000-96870600	Weak transcription	Rectal Smooth Muscle	rectum
16	chr9:96846200-96859800	Weak transcription	Ovary	ovary
17	chr9:96847000-96859800	Weak transcription	Pancreas	Pancrea
18	chr9:96847000-96860200	Weak transcription	Fetal Muscle Trunk	muscle
19	chr9:96847800-96859800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr9:96847800-96859800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr9:96847800-96860200	Weak transcription	Cortex derived primary cultured neurospheres	brain
22	chr9:96847800-96860200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
23	chr9:96847800-96860400	Weak transcription	Spleen	Spleen
24	chr9:96847800-96862600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr9:96848000-96863200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr9:96849000-96868800	Weak transcription	HepG2	liver
27	chr9:96849200-96859800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr9:96849200-96859800	Weak transcription	NHLF	lung
29	chr9:96849400-96859800	Weak transcription	NHDF-Ad	bronchial
30	chr9:96849400-96866800	Weak transcription	Fetal Kidney	kidney
31	chr9:96849400-96869600	Weak transcription	HUVEC	blood vessel
32	chr9:96849400-96869800	Weak transcription	Colon Smooth Muscle	Colon
33	chr9:96849400-96883800	Weak transcription	Brain Germinal Matrix	brain
34	chr9:96849600-96870400	Weak transcription	Fetal Lung	lung
35	chr9:96849800-96864200	Weak transcription	Fetal Heart	heart
36	chr9:96850600-96870000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr9:96851000-96860200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr9:96851200-96859800	Weak transcription	A549	lung
39	chr9:96855000-96860800	Weak transcription	Primary B cells from peripheral blood	blood
40	chr9:96855400-96863200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr9:96855800-96860200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
42	chr9:96856000-96863600	Weak transcription	Primary hematopoietic stem cells	blood
43	chr9:96856400-96863600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
44	chr9:96856600-96860800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr9:96856600-96861600	Weak transcription	Monocytes-CD14+_RO01746	blood
46	chr9:96857000-96863600	Weak transcription	Thymus	Thymus
47	chr9:96857200-96859800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
48	chr9:96857200-96863600	Weak transcription	Fetal Thymus	thymus
49	chr9:96857200-96871000	Weak transcription	H9 Cell Line	embryonic stem cell
50	chr9:96857200-96882800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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