Variant report

Variant	rs7852992
Chromosome Location	chr9:96774518-96774519
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10116369	1.00[MEX][hapmap]
rs6479524	1.00[ASW][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7019701	0.91[AFR][1000 genomes]
rs7024817	1.00[MEX][hapmap]
rs7039624	1.00[MEX][hapmap]
rs7851301	0.80[AFR][1000 genomes]
rs7855941	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7863033	0.82[AFR][1000 genomes]
rs7866977	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];0.93[YRI][hapmap];0.88[AFR][1000 genomes]
rs7874963	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893589	chr9:96624645-96884544	Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96773000-96774600	Enhancers	Primary T helper naive cells from peripheral blood	blood
2	chr9:96773000-96774600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
3	chr9:96773000-96775800	Enhancers	Primary T cells from cord blood	blood
4	chr9:96773200-96775200	Enhancers	Fetal Lung	lung
5	chr9:96773600-96774600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr9:96773800-96781800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr9:96774000-96775000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr9:96774000-96776800	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr9:96774000-96776800	Weak transcription	HSMMtube	muscle
10	chr9:96774000-96777400	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr9:96774200-96775200	Weak transcription	Primary T helper cells fromperipheralblood	blood
12	chr9:96774200-96775600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
13	chr9:96774200-96779400	Weak transcription	Fetal Stomach	stomach
14	chr9:96774400-96775600	Weak transcription	Primary T helper cells PMA-I stimulated	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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