Variant report

Variant	rs704145
Chromosome Location	chrX:55035283-55035284
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chrX:55033865..55037521-chrX:55039031..55040959,4	MCF-7	breast:
2	chrX:55004697..55006668-chrX:55034561..55037908,3	MCF-7	breast:
3	chrX:55025024..55029548-chrX:55030587..55036147,10	MCF-7	breast:
4	chrX:55034532..55036721-chrX:55082084..55084906,2	MCF-7	breast:
5	chrX:55030130..55032699-chrX:55032826..55036879,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000169188	Chromatin interaction
ENSG00000234466	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12014660	0.85[ASW][hapmap];0.87[LWK][hapmap];1.00[YRI][hapmap]
rs2273138	0.81[GIH][hapmap]
rs3765479	0.81[GIH][hapmap]
rs4826364	0.85[ASW][hapmap];0.84[GIH][hapmap];0.85[LWK][hapmap];1.00[YRI][hapmap]
rs4826365	0.85[ASW][hapmap];0.84[GIH][hapmap];0.88[LWK][hapmap];1.00[YRI][hapmap]
rs5914241	0.84[GIH][hapmap]
rs5960055	0.81[GIH][hapmap]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs704145	TRO	cis	multi-tissue	Pritchard
rs704145	TRO	cis	lymphoblastoid	seeQTL

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:55027400-55036000	Weak transcription	Aorta	Aorta
2	chrX:55027600-55035400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chrX:55027600-55035600	Weak transcription	Psoas Muscle	Psoas
4	chrX:55027800-55035400	Weak transcription	Brain Germinal Matrix	brain
5	chrX:55029000-55035800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chrX:55029800-55036000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chrX:55030000-55035600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chrX:55030800-55036800	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chrX:55031000-55035400	Weak transcription	Brain Cingulate Gyrus	brain
10	chrX:55031800-55035400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
11	chrX:55032400-55036200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chrX:55032800-55035400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chrX:55032800-55035400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chrX:55033000-55036000	Weak transcription	Brain Anterior Caudate	brain
15	chrX:55033000-55036400	Enhancers	HMEC	breast
16	chrX:55033200-55036000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chrX:55033400-55035400	Weak transcription	Primary T helper cells fromperipheralblood	blood
18	chrX:55033400-55035600	Weak transcription	Brain Angular Gyrus	brain
19	chrX:55033400-55035600	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chrX:55033400-55035600	Enhancers	Pancreas	Pancrea
21	chrX:55033400-55036200	Enhancers	Skeletal Muscle Female	skeletal muscle
22	chrX:55033400-55036400	Enhancers	NHEK	skin
23	chrX:55033400-55037400	Weak transcription	Brain Substantia Nigra	brain
24	chrX:55033600-55035400	Weak transcription	H1 Cell Line	embryonic stem cell
25	chrX:55033600-55035400	Weak transcription	Primary T helper cells PMA-I stimulated	--
26	chrX:55033600-55035400	Enhancers	Stomach Mucosa	stomach
27	chrX:55033600-55035600	Weak transcription	Primary B cells from peripheral blood	blood
28	chrX:55033600-55035800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chrX:55033600-55035800	Enhancers	Adipose Nuclei	Adipose
30	chrX:55033600-55035800	Enhancers	NH-A	brain
31	chrX:55033600-55035800	Enhancers	NHDF-Ad	bronchial
32	chrX:55033600-55036000	Enhancers	Placenta	Placenta
33	chrX:55033800-55035400	Enhancers	Muscle Satellite Cultured Cells	--
34	chrX:55033800-55035400	Weak transcription	Brain Hippocampus Middle	brain
35	chrX:55033800-55035600	Weak transcription	Thymus	Thymus
36	chrX:55033800-55035800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chrX:55033800-55035800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chrX:55033800-55035800	Enhancers	Right Atrium	heart
39	chrX:55033800-55035800	Enhancers	HUVEC	blood vessel
40	chrX:55033800-55036000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chrX:55033800-55036400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chrX:55033800-55036600	Enhancers	Fetal Heart	heart
43	chrX:55034000-55035400	Weak transcription	Lung	lung
44	chrX:55034000-55035600	Weak transcription	Colonic Mucosa	Colon
45	chrX:55034000-55035800	Enhancers	K562	blood
46	chrX:55034000-55035800	Enhancers	Osteobl	bone
47	chrX:55034000-55036000	Enhancers	Left Ventricle	heart
48	chrX:55034000-55036000	Enhancers	HSMMtube	muscle
49	chrX:55034000-55036200	Enhancers	Fetal Intestine Small	intestine
50	chrX:55034000-55036400	Enhancers	Liver	Liver

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