Variant report

Variant	rs4826365
Chromosome Location	chrX:54992396-54992397
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1043031	0.83[CEU][hapmap];0.90[CHD][hapmap];0.80[JPT][hapmap];0.97[TSI][hapmap]
rs1043034	0.84[CEU][hapmap];0.90[CHD][hapmap];0.81[JPT][hapmap];0.89[MEX][hapmap];0.91[MKK][hapmap];0.97[TSI][hapmap]
rs1043044	0.84[CEU][hapmap];0.81[CHB][hapmap];0.90[CHD][hapmap];0.81[JPT][hapmap];0.89[MEX][hapmap];0.97[TSI][hapmap]
rs12014660	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.94[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs12851962	0.89[CEU][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.94[TSI][hapmap]
rs12858090	0.84[CEU][hapmap];0.81[CHB][hapmap];0.81[JPT][hapmap]
rs12858147	0.84[CEU][hapmap];0.81[CHB][hapmap];0.80[JPT][hapmap]
rs2005463	1.00[CEU][hapmap];0.96[GIH][hapmap];0.93[JPT][hapmap];0.83[MEX][hapmap];0.97[TSI][hapmap]
rs2071932	0.84[CEU][hapmap];0.81[CHB][hapmap];0.90[CHD][hapmap];0.81[JPT][hapmap];0.83[MEX][hapmap];0.97[TSI][hapmap]
rs2071933	0.84[CEU][hapmap];0.81[CHB][hapmap];0.86[CHD][hapmap];0.81[JPT][hapmap];0.83[MEX][hapmap];0.97[TSI][hapmap]
rs2071934	0.84[CEU][hapmap];0.81[CHB][hapmap];0.81[JPT][hapmap]
rs2273138	0.89[CEU][hapmap];0.81[CHB][hapmap];0.90[CHD][hapmap];0.96[GIH][hapmap];0.81[JPT][hapmap];0.90[LWK][hapmap];0.89[MEX][hapmap];0.87[MKK][hapmap];0.97[TSI][hapmap]
rs2281383	0.89[CEU][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.94[TSI][hapmap]
rs2361189	0.84[CEU][hapmap]
rs3765479	0.89[CEU][hapmap];0.82[CHB][hapmap];0.80[CHD][hapmap];0.96[GIH][hapmap];0.97[TSI][hapmap]
rs4826364	1.00[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.93[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs5914241	0.89[CEU][hapmap];0.81[CHB][hapmap];0.90[CHD][hapmap];0.92[GIH][hapmap];0.81[JPT][hapmap];0.83[MEX][hapmap];0.97[TSI][hapmap]
rs5960055	0.89[CEU][hapmap];0.81[CHB][hapmap];0.80[CHD][hapmap];0.96[GIH][hapmap];0.83[MEX][hapmap];0.97[TSI][hapmap]
rs5960336	0.84[CEU][hapmap];0.80[CHB][hapmap];0.81[JPT][hapmap]
rs6611391	0.89[CEU][hapmap];0.81[CHB][hapmap];0.81[JPT][hapmap]
rs704145	0.85[ASW][hapmap];0.84[GIH][hapmap];0.88[LWK][hapmap];1.00[YRI][hapmap]
rs743974	0.84[CEU][hapmap];0.86[CHD][hapmap];0.86[TSI][hapmap]
rs763183	0.84[CEU][hapmap];0.81[CHB][hapmap];0.90[CHD][hapmap];0.81[JPT][hapmap];0.89[MEX][hapmap];0.97[TSI][hapmap]
rs763184	0.84[CEU][hapmap];0.81[CHB][hapmap];0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv6912	chrX:54980516-55025317	Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:54985800-54995400	Weak transcription	Liver	Liver
2	chrX:54986800-54996800	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chrX:54989800-54993600	Enhancers	Primary T cells from cord blood	blood
4	chrX:54990200-54993200	Enhancers	Primary T helper cells PMA-I stimulated	--
5	chrX:54991200-54992600	Weak transcription	Primary T helper cells fromperipheralblood	blood
6	chrX:54991400-54992400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
7	chrX:54991400-54992600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chrX:54991600-54992600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
9	chrX:54991800-54992800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
10	chrX:54992000-54992800	Weak transcription	Primary T killer memory cells from peripheral blood	blood

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