Variant report

Variant	rs763184
Chromosome Location	chrX:54841457-54841458
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chrX:54835376..54839263-chrX:54839961..54843837,5	K562	blood:
2	chrX:54836915..54840513-chrX:54840777..54845146,5	K562	blood:

Variant related genes	Relation type
ENSG00000102316	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1043031	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs1043034	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs1043044	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12014660	0.85[CEU][hapmap];0.81[CHB][hapmap];0.81[JPT][hapmap]
rs12832165	0.81[CEU][hapmap]
rs12851962	0.94[CEU][hapmap];0.81[JPT][hapmap]
rs12858090	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12858147	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2005463	0.84[CEU][hapmap]
rs2071932	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2071933	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2071934	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2273138	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2281383	0.94[CEU][hapmap];0.81[JPT][hapmap]
rs2361189	1.00[CEU][hapmap]
rs3765479	0.94[CEU][hapmap];0.88[CHB][hapmap]
rs4826364	0.84[CEU][hapmap];0.87[CHB][hapmap]
rs4826365	0.84[CEU][hapmap];0.81[CHB][hapmap];0.81[JPT][hapmap]
rs5914241	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5960055	0.94[CEU][hapmap];0.87[CHB][hapmap]
rs5960336	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6611391	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs743974	1.00[CEU][hapmap];0.94[CHB][hapmap];0.81[JPT][hapmap]
rs763183	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:54835200-54843800	Weak transcription	Small Intestine	intestine
2	chrX:54835800-54850600	Weak transcription	Right Atrium	heart
3	chrX:54836000-54844000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chrX:54836000-54847400	Weak transcription	Psoas Muscle	Psoas
5	chrX:54836200-54842200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
6	chrX:54836200-54843000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chrX:54836200-54843200	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
8	chrX:54836200-54843200	Strong transcription	Fetal Thymus	thymus
9	chrX:54836200-54850800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chrX:54836400-54841800	Strong transcription	Colon Smooth Muscle	Colon
11	chrX:54836400-54842200	Strong transcription	Aorta	Aorta
12	chrX:54836400-54842600	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
13	chrX:54836400-54842800	Strong transcription	H1 Cell Line	embryonic stem cell
14	chrX:54836400-54843200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chrX:54836400-54843200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
16	chrX:54836400-54843200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chrX:54836400-54843200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chrX:54836400-54843200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chrX:54836400-54844000	Weak transcription	Pancreatic Islets	Pancreatic Islet
20	chrX:54836600-54841600	Weak transcription	K562	blood
21	chrX:54836600-54841800	Strong transcription	HUES6 Cell Line	embryonic stem cell
22	chrX:54836600-54842000	Strong transcription	Brain Substantia Nigra	brain
23	chrX:54836600-54842200	Strong transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chrX:54836600-54842200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
25	chrX:54836600-54842200	Strong transcription	Cortex derived primary cultured neurospheres	brain
26	chrX:54836600-54842200	Strong transcription	Fetal Intestine Small	intestine
27	chrX:54836600-54842400	Strong transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chrX:54836600-54842600	Strong transcription	Brain Inferior Temporal Lobe	brain
29	chrX:54836600-54842800	Strong transcription	HUES64 Cell Line	embryonic stem cell
30	chrX:54836600-54842800	Strong transcription	Left Ventricle	heart
31	chrX:54836600-54842800	Strong transcription	Right Ventricle	heart
32	chrX:54836600-54843000	Strong transcription	Primary B cells from peripheral blood	blood
33	chrX:54836600-54843000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
34	chrX:54836600-54843200	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chrX:54836600-54843200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chrX:54836600-54843200	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
37	chrX:54836600-54843200	Strong transcription	Fetal Lung	lung
38	chrX:54836600-54843200	Strong transcription	Spleen	Spleen
39	chrX:54836600-54843400	Strong transcription	Fetal Intestine Large	intestine
40	chrX:54836800-54842200	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
41	chrX:54836800-54842400	Strong transcription	Thymus	Thymus
42	chrX:54836800-54842600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
43	chrX:54836800-54842600	Strong transcription	Adipose Nuclei	Adipose
44	chrX:54836800-54842600	Strong transcription	Rectal Smooth Muscle	rectum
45	chrX:54836800-54843000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
46	chrX:54836800-54843200	Strong transcription	Ovary	ovary
47	chrX:54836800-54843200	Strong transcription	Rectal Mucosa Donor 29	rectum
48	chrX:54836800-54843200	Strong transcription	HSMMtube	muscle
49	chrX:54837000-54842200	Strong transcription	Sigmoid Colon	Sigmoid Colon
50	chrX:54837000-54842600	Strong transcription	Brain Cingulate Gyrus	brain

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