Variant report

Variant	rs5914241
Chromosome Location	chrX:54946636-54946637
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chrX:54945949..54949163-chrX:54951177..54953540,3	K562	blood:

Variant related genes	Relation type
ENSG00000067445	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1043031	0.94[CEU][hapmap];0.93[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap]
rs1043034	0.94[CEU][hapmap];0.93[CHB][hapmap];0.93[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap]
rs1043044	0.94[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap]
rs12014660	0.89[CEU][hapmap];0.80[CHB][hapmap];0.89[CHD][hapmap];0.81[JPT][hapmap];0.97[TSI][hapmap]
rs12851962	1.00[CEU][hapmap];0.92[GIH][hapmap];0.81[JPT][hapmap];0.97[TSI][hapmap]
rs12858090	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12858147	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2005463	0.89[CEU][hapmap];0.88[GIH][hapmap];0.94[TSI][hapmap]
rs2071932	0.94[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs2071933	0.94[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs2071934	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2273138	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap]
rs2281383	1.00[CEU][hapmap];0.96[GIH][hapmap];0.81[JPT][hapmap];0.97[TSI][hapmap]
rs2361189	0.94[CEU][hapmap]
rs3765479	1.00[CEU][hapmap];0.87[CHB][hapmap];0.90[CHD][hapmap];0.96[GIH][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap]
rs4826364	0.89[CEU][hapmap];0.87[CHB][hapmap];0.90[CHD][hapmap];0.92[GIH][hapmap];0.83[MEX][hapmap];0.97[TSI][hapmap]
rs4826365	0.89[CEU][hapmap];0.81[CHB][hapmap];0.90[CHD][hapmap];0.92[GIH][hapmap];0.81[JPT][hapmap];0.83[MEX][hapmap];0.97[TSI][hapmap]
rs5960055	1.00[CEU][hapmap];0.87[CHB][hapmap];0.90[CHD][hapmap];0.96[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs5960336	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6611391	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs704145	0.84[GIH][hapmap]
rs743974	0.94[CEU][hapmap];0.93[CHB][hapmap];0.90[CHD][hapmap];0.81[JPT][hapmap];0.94[MEX][hapmap];0.89[TSI][hapmap]
rs763183	0.94[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap]
rs763184	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:54946400-54946800	Enhancers	Pancreatic Islets	Pancreatic Islet
2	chrX:54946600-54946800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chrX:54946600-54946800	Enhancers	Dnd41	blood
4	chrX:54946600-54947800	Active TSS	ES-WA7 Cell Line	embryonic stem cell

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