Variant report

Variant	rs4826364
Chromosome Location	chrX:54983618-54983619
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1043031	0.84[CEU][hapmap];0.81[CHB][hapmap];0.90[CHD][hapmap];0.97[TSI][hapmap]
rs1043034	0.84[CEU][hapmap];0.81[CHB][hapmap];0.90[CHD][hapmap];0.89[MEX][hapmap];0.91[MKK][hapmap];0.97[TSI][hapmap]
rs1043044	0.84[CEU][hapmap];0.87[CHB][hapmap];0.90[CHD][hapmap];0.89[MEX][hapmap];0.97[TSI][hapmap]
rs12014660	1.00[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.93[JPT][hapmap];0.96[LWK][hapmap];0.94[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs12851962	0.89[CEU][hapmap];0.92[GIH][hapmap];0.93[JPT][hapmap];0.94[TSI][hapmap]
rs12858090	0.84[CEU][hapmap];0.87[CHB][hapmap]
rs12858147	0.84[CEU][hapmap];0.87[CHB][hapmap]
rs2005463	1.00[CEU][hapmap];0.96[GIH][hapmap];0.87[JPT][hapmap];0.83[MEX][hapmap];0.97[TSI][hapmap]
rs2071932	0.84[CEU][hapmap];0.87[CHB][hapmap];0.90[CHD][hapmap];0.83[MEX][hapmap];0.97[TSI][hapmap]
rs2071933	0.84[CEU][hapmap];0.87[CHB][hapmap];0.86[CHD][hapmap];0.83[MEX][hapmap];0.97[TSI][hapmap]
rs2071934	0.84[CEU][hapmap];0.87[CHB][hapmap]
rs2273138	0.89[CEU][hapmap];0.87[CHB][hapmap];0.90[CHD][hapmap];0.96[GIH][hapmap];0.87[LWK][hapmap];0.89[MEX][hapmap];0.87[MKK][hapmap];0.97[TSI][hapmap]
rs2281383	0.89[CEU][hapmap];0.88[GIH][hapmap];0.93[JPT][hapmap];0.83[MEX][hapmap];0.94[TSI][hapmap]
rs2361189	0.84[CEU][hapmap]
rs3765479	0.89[CEU][hapmap];0.88[CHB][hapmap];0.80[CHD][hapmap];0.96[GIH][hapmap];0.97[TSI][hapmap]
rs4826365	1.00[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.93[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs5914241	0.89[CEU][hapmap];0.87[CHB][hapmap];0.90[CHD][hapmap];0.92[GIH][hapmap];0.83[MEX][hapmap];0.97[TSI][hapmap]
rs5960055	0.89[CEU][hapmap];0.80[CHD][hapmap];0.96[GIH][hapmap];0.83[MEX][hapmap];0.97[TSI][hapmap]
rs5960336	0.84[CEU][hapmap];0.86[CHB][hapmap]
rs6611391	0.89[CEU][hapmap];0.87[CHB][hapmap]
rs704145	0.85[ASW][hapmap];0.84[GIH][hapmap];0.85[LWK][hapmap];1.00[YRI][hapmap]
rs743974	0.84[CEU][hapmap];0.81[CHB][hapmap];0.86[CHD][hapmap];0.86[TSI][hapmap]
rs763183	0.84[CEU][hapmap];0.87[CHB][hapmap];0.90[CHD][hapmap];0.89[MEX][hapmap];0.97[TSI][hapmap]
rs763184	0.84[CEU][hapmap];0.87[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv6912	chrX:54980516-55025317	Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs4826364	TRO	cis	multi-tissue	Pritchard
rs4826364	TRO	cis	lymphoblastoid	seeQTL

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:54978400-54990600	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chrX:54979400-54986400	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chrX:54980200-54984600	Weak transcription	Adipose Nuclei	Adipose
4	chrX:54981800-54985800	Strong transcription	Liver	Liver
5	chrX:54983000-54985600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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