Variant report

Variant	rs7048277
Chromosome Location	chr9:97315133-97315134
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:97309308..97311468-chr9:97313942..97316861,2	MCF-7	breast:
2	chr9:97314619..97316650-chr9:97365797..97368541,2	K562	blood:

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs10115929	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10119223	0.81[ASN][1000 genomes]
rs10119419	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10733753	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10761331	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10761332	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10761333	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10761336	0.85[EUR][1000 genomes]
rs10821364	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10821365	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10821367	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10821369	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10993226	0.81[ASN][1000 genomes]
rs10993241	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10993242	0.96[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11790263	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12552009	0.86[ASN][1000 genomes]
rs2280300	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2679602	1.00[CHB][hapmap];0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs2679611	0.86[ASN][1000 genomes]
rs2772013	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2790404	0.82[ASN][1000 genomes]
rs2945802	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2987882	1.00[CHB][hapmap];0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs2987886	0.86[ASN][1000 genomes]
rs2987888	0.86[ASN][1000 genomes]
rs2987889	0.86[ASN][1000 genomes]
rs2993975	0.83[ASN][1000 genomes]
rs3864788	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4291336	0.81[ASN][1000 genomes]
rs4744353	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs479197	0.85[ASN][1000 genomes]
rs488270	0.92[ASN][1000 genomes]
rs491123	0.86[ASN][1000 genomes]
rs504644	0.86[ASN][1000 genomes]
rs514222	1.00[CHB][hapmap];0.83[JPT][hapmap];0.84[ASN][1000 genomes]
rs518768	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs540124	0.87[CHB][hapmap];0.90[JPT][hapmap];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs543698	0.92[ASN][1000 genomes]
rs543731	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs547693	0.84[ASN][1000 genomes]
rs549615	0.86[ASN][1000 genomes]
rs572689	0.86[ASN][1000 genomes]
rs573371	0.86[ASN][1000 genomes]
rs573847	0.92[ASN][1000 genomes]
rs576745	0.81[JPT][hapmap]
rs605323	0.86[ASN][1000 genomes]
rs606207	0.84[ASN][1000 genomes]
rs607160	0.86[ASN][1000 genomes]
rs6479554	0.81[CEU][hapmap];0.82[EUR][1000 genomes]
rs652867	0.86[ASN][1000 genomes]
rs663092	0.86[ASN][1000 genomes]
rs669113	0.81[ASN][1000 genomes]
rs678363	0.86[ASN][1000 genomes]
rs688843	1.00[CHB][hapmap];0.95[JPT][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs693399	1.00[CHB][hapmap];0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs7024700	0.92[CHB][hapmap]
rs781650	1.00[CHB][hapmap];0.86[JPT][hapmap];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7867912	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs802918	0.87[CHB][hapmap]
rs802919	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9409801	0.86[ASN][1000 genomes]
rs965474	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9696774	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761545	chr9:97025298-97356950	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1041195	chr9:97054795-97402378	Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	esv1840205	chr9:97202200-97366400	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	nsv893595	chr9:97268182-97330693	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv972786	chr9:97308737-97320211	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97304800-97315200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr9:97311600-97315200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr9:97312000-97315600	Weak transcription	A549	lung
4	chr9:97313000-97316800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr9:97313200-97316600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr9:97313400-97315600	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr9:97313600-97316000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr9:97313800-97315400	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr9:97313800-97315800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr9:97314200-97315200	Enhancers	Liver	Liver
11	chr9:97314200-97315400	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr9:97314800-97315400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr9:97314800-97315800	Enhancers	Stomach Mucosa	stomach
14	chr9:97315000-97315200	Enhancers	Duodenum Mucosa	Duodenum
15	chr9:97315000-97315200	Enhancers	HepG2	liver
16	chr9:97315000-97315400	Enhancers	Rectal Mucosa Donor 31	rectum
17	chr9:97315000-97315400	Enhancers	Hela-S3	cervix
18	chr9:97315000-97316000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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